Deblois

BigY3: 350707
MDKA Birth: Canada > Quebec 1764

Tree Position

R-P312/S116 > Z40481 > ZZ11 > DF27/S250 > ZZ12 > Z46512 > FGC78762 > BY30997

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY3
350707
22276023-G-T 20114137-G-T FGC30535 DYZ19 A*
3884517-T-C 4016476-T-C A*
25873851-G-A 23727704-G-A P1_Y1 A*
22274406-C-A 20112520-C-A DYZ19 A*
6292829-T-C 6424788-T-C IR3_Dst A*
16116425-C-T 14004545-C-T P8_Prx A*
18296783-T-C 16184903-T-C P6_Prx A*
18512323-A-G 16400443-A-G P6_Dst A*
19841702-G-A 17729822-G-A P5_Prx A*
20055489-T-C 17943609-T-C P5_Prx A*
22231705-C-T 20069819-C-T DYZ19 A*
25604083-C-T 23457936-C-T P1_gr1 A*
26118554-G-A 23972407-G-A P1_Y1 A*
26125166-A-G 23979019-A-G P1_Y1 A*
21515006-G-A 19353120-G-A JFS0202FGC14703 ZS1824 YY+
27647681-C-T 25501534-C-T FGC73075 P1_Y2 +
5967139-G-A 6099098-G-A FT166866 +
13204543-C-T 11048867-C-T BY84358 +
3490157-G-A 3622116-G-A FT165609 +
4710010-C-T 4841969-C-T FT166231 +
5851667-A-G 5983626-A-G FT166811 +
5901067-G-A 6033026-G-A FT166833 +
5965410-G-A 6097369-G-A FT166865 +
6508909-T-G 6640868-T-G FT81705 +
6743326-A-G 6875285-A-G FT167134 YY+
7635982-C-T 7767941-C-T FT167449 YY+
7857248-G-A 7989207-G-A FT167544 YY+
8224637-G-A 8356596-G-A BY34808 YY+
8423224-C-T 8555183-C-T FT167755 YY+
8714494-A-G 8846453-A-G BY34811 YY+
8856378-G-A 8988337-G-A FT266379 Y+
13675756-T-A 11520080-T-A FT268742 +
11649138-T-C FT450106 +
11677226-C-T FT268741 +
13815923-T-A 11695217-T-A FT168191 +
14000196-G-A 11879490-G-A FT168351 Y+
14208514-CCTT-C 12087808-CCTT-C +
14313823-C-G 12193117-C-G FT168527 YY+
14809391-A-G 12697462-A-G FT168726 YY+
14817803-T-C 12705874-T-C BY34813 YY+
15008416-T-C 12896501-T-C FT168788 YY+
16051287-T-C 13939407-T-C FT169141 YY+
16287021-T-A 14175141-T-A FT169213 YY+
16644918-G-C 14533038-G-C FT169361 YY+
16672561-T-C 14560681-T-C FT169382 YY+
16793269-G-A 14681389-G-A BY34817 YY+
17006944-C-T 14895064-C-T FT169500 YY+
17169213-A-C 15057333-A-C FT169566 YY+
18024075-C-T 15912195-C-T FT169911 Y+
18208304-G-A 16096424-G-A FT170004 YY+
18678476-G-C 16566596-G-C FT170129 YY+
18855903-T-C 16744023-T-C FT170184 Y+
18934309-A-G 16822429-A-G FT170214 YY+
18937034-C-T 16825154-C-T FT170218 YY+
19079970-GC-G 16968090-GC-G +
19207298-G-T 17095418-G-T BY34820 YY+
21123597-A-C 18961711-A-C FT170509 Y+
21490419-G-A 19328533-G-A YY+
22054272-A-T 19892386-A-T FT170901 YY+
22631955-T-TA 20470069-T-TA +
22899297-C-T 20737411-C-T BY34824 YY+
23017979-T-G 20856093-T-G FT171166 Y+
23138543-C-A 20976657-C-A FT171216 YY+
23235589-C-T 21073703-C-T FT171245 Y+
28512777-C-T 26366630-C-T FT171584 +
28715157-G-T 26569010-G-T FT171681 +
13855522-G-GATGGA 11734816-G-GATGGA 11×ATGGA*
13809522-AGGAATGGAAT-A 11688816-AGGAATGGAAT-A 10×GGAAT*
3320972-A-G 3452931-A-G A13610Y2014 FGC1750 **
17229432-T-C 15117552-T-C **
59022271-C-G 56876124-C-G 50×A**
19700620-A-G 17588740-A-G P5_Prx **
26081765-A-G 23935618-A-G P1_Y1 **
7707-G-T **
7285578-A-T 7417537-A-T **
7285581-A-T 7417540-A-T **
2669121-T-C 2801080-T-C **
4153501-G-T 4285460-G-T **
6404215-G-A 6536174-G-A FT167000 **
13484178-A-G 11328502-A-G **
17505781-G-A 15393901-G-A **
18010488-AT-A 15898608-AT-A P7_Dst 8×T**
18931868-C-T 16819988-C-T **
19083136-C-G 16971256-C-G **
21042766-A-T 18880880-A-T **
22441052-C-A 20279166-C-A BY218961 DYZ19 **
22461124-A-G 20299238-A-G DYZ19 **
22461605-T-C 20299719-T-C FT268743 DYZ19 **
23016082-G-T 20854196-G-T **
23272339-T-G 21110453-T-G FT171262 **
7723-C-A **
13223482-G-A 11067806-G-A ***
15358761-GA-G 13246880-GAA-G 26×A***
56861826-A-AGG ***
16541084-C-A 14429204-C-A ***
15364059-CAAAAAA-C 13252179-CAAAAAA-C 21×A***
13469955-C-A 11314279-C-A ***
15557033-CAAAAA-C,CAAAA 13445153-CAAAAA-C,CAAAA 18×A***
13223581-A-T 11067905-A-T ***
28596399-GT-G,GTT 26450252-GT-G,GTT 16×T***
6601235-CAT-C 6733194-CAT-C ***
4346565-ATTTT-A,ATT 4478524-ATTTT-A,ATT 22×T***
3557240-A-G 3689199-A-G ***
5981085-A-T 6113044-A-T ***
8157565-T-C 8289524-T-C ***
9418243-TTGTG-T,TTG 9580634-TTGTG-T,TTG 17×TG***
13484078-G-C 11328402-G-C ***
17614036-ATT-A,AT 15502156-ATT-A,AT 12×T***
22346422-G-T 20184536-G-T DYZ19 ***
27700039-G-T 25553892-G-T P1_Y2 ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.