Tree Position

R-P312/S116 > Z40481 > ZZ11 > DF27/S250 > Z195/S355 > Z272 > S450 > Z295/S1217 > S25783 > CTS4065 > FGC23196 > FGC23175 > FGC32182

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRFTDNA
76755
FGC-BigY
AMLSX
8701198-T-TA 8833157-T-TA ++
24476089-T-G 22329942-T-G FGC32192 Y++
16438348-C-G 14326468-C-G FGC32190 YY++
16377909-G-A 14266029-G-A FGC32189 YY++
16087179-G-A 13975299-G-A FGC32188 Y++
15822499-A-C 13710619-A-C FGC32187 YY++
13686053-G-C 11530377-G-C FGC32185 ++
19325606-C-A 17213726-C-A **
4958377-G-T 5090336-G-T **
22542284-C-A 20380398-C-A **
16624708-G-A 14512828-G-A **
16041187-C-A 13929307-C-A **
16882024-C-A 14770144-C-A **
3334983-G-T 3466942-G-T **
3273232-G-T 3405191-G-T **
22167212-C-G 20005326-C-G **
17222575-C-A 15110695-C-A **
2758458-C-A 2890417-C-A **
10048615-G-T 10211006-G-T **
10048662-C-T 10211053-C-T **
23005838-A-G 20843952-A-G **
28546726-C-A 26400579-C-A **
8078934-C-A 8210893-C-A **
15430617-G-A 13318737-G-A **
14180886-C-A 12060180-C-A **
22065033-C-A 19903147-C-A **
14960282-C-A 12848357-C-A **
14272860-C-A 12152154-C-A **
14355254-C-A 12234549-C-A **
14717520-G-T 12605588-G-T **
14607774-C-A 12495976-C-A **
14565935-G-T 12454135-G-T **
28625537-T-C 26479390-T-C **
58985312-C-A 56839165-C-A **
14372083-C-A 12251379-C-A **
58981502-C-A 56835355-C-A **
7008136-C-A 7140095-C-A **
13597258-C-A 11441582-C-A **
22085460-C-A 19923574-C-A **
18767305-C-T 16655425-C-T **
21054409-C-A 18892523-C-A **
22220574-C-A 20058688-C-A DYZ19 *****
10048604-T-A 10210995-T-A **
27369590-G-C 25223443-G-C P1_g3 **
21340057-C-A 19178171-C-A **
13494140-C-A 11338464-C-A **
10025014-C-A 10187405-C-A **
21393628-C-A 19231742-C-A **
10048601-G-C 10210992-G-C **
10048587-A-T 10210978-A-T **
24777087-A-C 22630940-A-C P3_b2 ***
24794496-T-G 22648349-T-G P3_b2 ***
24721577-C-T 22575430-C-T P3_b2 ***
24673297-A-G 22527150-A-G P3_b2 ***
26553411-G-T 24407264-G-T P1_g2 ***
26558014-T-C 24411867-T-C P1_g2 ***
26541557-T-A 24395410-T-A P1_g2 ***
26124396-T-A 23978249-T-A P1_Y1 ***
26631849-T-C 24485702-T-C P1_g2 ***
26563820-G-T 24417673-G-T P1_g2 ***
25103067-C-A 22956920-C-A g1 ***
26657066-C-A 24510919-C-A P1_g2 ***
24671213-G-C 22525066-G-C P3_b2 ***
26661614-C-A 24515467-C-A P1_g2 ***
26746958-C-A 24600811-C-A P1_g2 ***
26776111-A-T 24629964-A-T P1_g2 ***
26810702-G-T 24664555-G-T P1_g2 ***
24975975-T-G 22829828-T-G g1 ***
25231924-T-G 23085777-T-G P2_r1 ***
25207703-G-C 23061556-G-C P2_r1 ***
26463200-A-T 24317053-A-T P1_Y1 ***
26344131-A-C 24197984-A-C P1_Y1 ***
24595478-A-T 22449331-A-T P3_t2 ***
26391451-G-A 24245304-G-A P1_Y1 ***
25845158-G-A 23699011-G-A P1_b3 ***
25845139-T-A 23698992-T-A P1_b3 ***
25806700-T-G 23660553-T-G P1_b3 ***
26463176-C-T 24317029-C-T P1_Y1 ***
25676403-G-T 23530256-G-T P1_b3 ***
25602271-T-A 23456124-T-A P1_gr1 ***
26505338-T-C 24359191-T-C P1_Y1 ***
25504641-A-C 23358494-A-C P1_gr1 ***
25456411-C-A 23310264-C-A P2_r2 ***
25372091-A-T 23225944-A-T P2_r2 ***
26495672-C-T 24349525-C-T P1_Y1 ***
25372080-G-A 23225933-G-A P2_r2 ***
25291221-C-A 23145074-C-A P2_r1 ***
26495684-A-G 24349537-A-G P1_Y1 ***
26239177-T-G 24093030-T-G P1_Y1 ***
25207741-T-G 23061594-T-G P2_r1 ***
24595539-A-T 22449392-A-T P3_t2 ***
23625493-A-G 21463607-A-G ***
24595430-C-G 22449283-C-G P3_t2 ***
20998297-T-C 18836411-T-C P4_Dst ***
22281946-A-G 20120060-A-G DYZ19 ***
22065068-A-G 19903182-A-G ***
21577365-G-T 19415479-G-T ***
21488867-G-A 19326981-G-A ***
21394390-C-A 19232504-C-A ***
21352815-C-G 19190929-C-G ***
21323452-A-G 19161566-A-G ***
21107041-C-G 18945155-C-G ***
21107030-C-A 18945144-C-A ***
21107026-T-G 18945140-T-G ***
20809669-C-A 18647783-C-A P4_Gap ***
22330445-T-C 20168559-T-C DYZ19 ***
20622565-G-A 18460679-G-A P4_Prx ***
20516715-A-C 18354829-A-C P5_Dst ***
20510724-T-A 18348838-T-A P5_Dst ***
20508737-A-G 18346851-A-G P5_Dst ***
20500988-T-G 18339102-T-G P5_Dst ***
20439204-A-T 18277318-A-T P5_Dst ***
20434742-C-T 18272856-C-T P5_Dst ***
19773617-C-A 17661737-C-A P5_Prx ***
19727576-A-T 17615696-A-T P5_Prx ***
19704252-A-G 17592372-A-G P5_Prx ***
19693500-C-T 17581620-C-T P5_Prx ***
22329851-C-A 20167965-C-A DYZ19 ***
22330453-G-A 20168567-G-A DYZ19 ***
24535184-G-C 22389037-G-C P3_t2 ***
23696326-A-C 21534440-A-C ***
24387977-A-C 22241830-A-C ***
24387765-C-T 22241618-C-T ***
24278301-A-G 22132154-A-G P3_b1 ***
24114319-T-A 21968172-T-A P3_b1 ***
24043795-A-G 21897648-A-G ***
24042742-G-A 21896595-G-A ***
24026947-G-T 21880800-G-T ***
24023926-T-A 21877779-T-A ***
23997440-A-G 21851293-A-G ***
23821107-T-A 21659221-T-A ***
26880358-A-C 24734211-A-C P1_r3 ***
22330463-T-C 20168577-T-C DYZ19 ***
23465387-G-T 21303501-G-T ***
23449042-C-A 21287156-C-A ***
23440697-C-A 21278811-C-A ***
23355522-C-A 21193636-C-A ***
23204566-C-A 21042680-C-A ***
23185234-C-A 21023348-C-A ***
22991049-C-G 20829163-C-G ***
22778370-C-A 20616484-C-A ***
22619591-A-G 20457705-A-G ***
22433956-A-T 20272070-A-T DYZ19 ***
22431981-T-G 20270095-T-G DYZ19 ***
26880345-A-T 24734198-A-T P1_r3 ***
24807425-C-T 22661278-C-T P3_b2 ***
26902197-G-A 24756050-G-A P1_r3 ***
13857969-CCT-TCG 11737263-CCT-TCG ***
20105750-C-CTATA 17993870-C-CTATA P5_Dst ***
20025482-T-TCCC 17913602-T-TCCC P5_Prx 14×C***
19743732-TAAAT-AAAAA 17631852-TAAAT-AAAAA P5_Prx ***
19727554-ACCT-CCCC 17615674-ACCT-CCCC P5_Prx ***
19682558-TGGGT-GGGGG 17570678-TGGGT-GGGGG P5_Prx ***
19510292-GTA-TTT 17398412-GTA-TTT ***
18454858-CCT-C 16342978-CCT-C P6_Dst 5×CTTT***
17950825-AATATATATATATATATATATATATATATAT-A 15838945-AATATATATATATATATATATATATATATAT-A 27×AT***
15491943-ATA-G 13380063-ATA-G ***
15320672-A-AAGAAGAAGG 13208790-A-AAGAAGAAGG ***
15022824-GTTTT-G 12910913-GTTT-G 16×T***
14937865-T-TTTCTTTTCTA 12825940-T-TTTCTTTTCTA ***
13857849-TAGAATT-CAGAATG 11737143-TAGAATT-CAGAATG ***
20872237-AT-A 18710351-AT-A P4_Dst 11×T***
13846940-TAT-GAA 11726234-TAT-GAA ***
13846911-TATTTATTCG-AATTGTTTCA 11726205-TATTTATTCG-AATTGTTTCA ***
13744426-GGAAC-AGAAT 11588750-GGAAC-AGAAT ***
13723167-GG-TT 11567491-GG-TT ***
13688047-GAATGT-G 11532371-GAATGT-G ***
13546989-ATT-A 11391313-ATT-A 16×T***
13461183-CA-TG 11305507-CA-TG ***
13131575-AGCAA-TGCAC 10621061-AGCAA-TGCAC ***
9952198-GGAAATT-CGA 10114589-GGAAATT-CGA ***
9731612-GTTTG-TTTTT 9894003-GTTTG-TTTTT IR3_Prx ***
9714716-CT-C 9877107-CT-C IR3_Prx 13×T***
9698168-CA-C 9860559-CA-C IR3_Prx ***
20252992-TTTA-T 18091106-TTTA-T P5_Dst 6×TTA***
21515841-CGAC-GGAA 19353955-CGAC-GGAA ***
8408465-TCCCT-CCCCG 8540424-TCCCT-CCCCG ***
27583038-GTTCTATTG-TTTTTTTTT 25436891-GTTCTATTG-TTTTTTTTT P1_Y2 ***
23293598-GTA-G 21131712-GTA-G 20×TA***
8555543-G-GTTTTTT 8687502-G-GTTTTTT ***
58997064-ACCAG-TCCAA 56850917-ACCAG-TCCAA ***
58992976-AG-TT 56846829-AG-TT ***
58982289-ATGCCA-TTCCCT 56836142-ATGCCA-TTCCCT ***
58981972-TCCAT-CCCA 56835825-TCCAT-CCCA ***
58981873-TG-CA 56835726-TG-CA ***
58978989-G-GCCACTCCATT 56832842-G-GCCACTCCATT ***
58978686-C-CTCCACTCCATTCCAT 56832539-C-CTCCACTCCATTCCAT ***
28793019-TCGG-ACGC 26646872-TCGG-ACGC ***
28375653-TAA-T 26229506-TAA-T P1_gr2 14×A***
27641766-CTT-C 25495619-CTT-C P1_Y2 14×T***
27302667-GTA-G 25156520-GTA-G P1_g3 ***
22330439-CC-AA 20168553-CC-AA DYZ19 ***
26814944-TA-T 24668797-TA-T P1_g2 12×A***
26415697-GAAAG-AAAAA 24269550-GAAAG-AAAAA P1_Y1 ***
26376499-CAAAA-C 24230352-CAAAA-C P1_Y1 18×A***
25939403-CT-C 23793256-CT-C P1_Y1 11×T***
25702689-GA-G 23556542-GA-G P1_b3 13×A***
25536736-CA-C 23390589-CA-C P1_gr1 8×A***
25456371-C-AAA 23310224-C-AAA P2_r2 ***
25445990-ATT-A 23299843-ATT-A P2_r2 17×T***
25335133-GT-G 23188986-GT-G P2_r1 11×T***
24743954-T-TA 22597807-T-TA P3_b2 9×A***
24575875-TC-T 22429728-TC-T P3_t2 ***
24325455-AT-A 22179308-AT-A P3_t1 11×T***
24052805-CT-C 21906658-CT-C P3_b1 10×T***
9372603-C-CT 9534994-C-CT 13×T***
6298790-ATTTA-TTTTC 6430749-ATTTA-TTTTC IR3_Dst ***
26914221-A-T 24768074-A-T P1_r3 ***
27082225-A-G 24936078-A-G P1_r4 ***
27418028-C-T 25271881-C-T P1_g3 ***
27398367-T-A 25252220-T-A P1_g3 ***
27346551-G-T 25200404-G-T P1_g3 ***
27337868-T-A 25191721-T-A P1_g3 ***
27289878-G-T 25143731-G-T P1_g3 ***
27254610-A-C 25108463-A-C P1_g3 ***
27222179-A-C 25076032-A-C P1_g3 ***
27161532-T-A 25015385-T-A P1_g3 ***
27151202-G-T 25005055-G-T P1_g3 ***
27082234-A-G 24936087-A-G P1_r4 ***
27082231-A-G 24936084-A-G P1_r4 ***
27082230-G-A 24936083-G-A P1_r4 ***
27082215-G-A 24936068-G-A P1_r4 ***
27618315-A-C 25472168-A-C P1_Y2 ***
27082179-T-G 24936032-T-G P1_r4 ***
19604795-G-T 17492915-G-T P5_Prx ***
27001841-A-T 24855694-A-T P1_r4 ***
27001837-A-G 24855690-A-G P1_r4 ***
27001764-T-G 24855617-T-G P1_r4 ***
26997351-G-T 24851204-G-T P1_r4 ***
26997343-G-A 24851196-G-A P1_r4 ***
26997316-A-T 24851169-A-T P1_r4 ***
26991241-G-T 24845094-G-T P1_r4 ***
26991212-G-T 24845065-G-T P1_r4 ***
26990981-A-G 24844834-A-G P1_r4 ***
26914241-A-T 24768094-A-T P1_r3 ***
27546693-C-T 25400546-C-T P1_Y2 ***
27700177-C-A 25554030-C-A P1_Y2 ***
6298773-GCA-CCC 6430732-GCA-CCC IR3_Dst ***
28609258-C-A 26463111-C-A ***
26906694-G-GA 24760547-G-GA P1_r3 19×A***
25514627-C-CT 23368480-C-CT P1_gr1 13×T***
25553754-A-AT 23407607-A-AT P1_gr1 13×T***
58974222-ATTCG-TTTCC 56828075-ATTCG-TTTCC ***
58992977-G-T 56846830-G-T ***
58982267-C-A 56836120-C-A ***
58981376-C-A 56835229-C-A ***
58887384-A-G 56703487-T-C ***
28765033-C-A 26618886-C-A ***
28765009-C-A 26618862-C-A ***
28760041-C-A 26613894-C-A ***
28742302-C-A 26596155-C-A ***
28588291-A-T 26442144-A-T ***
27700196-T-A 25554049-T-A P1_Y2 ***
28584514-G-T 26438367-G-T ***
28542473-C-A 26396326-C-A ***
28516670-C-A 26370523-C-A ***
28311636-A-T 26165489-A-T P1_b4 ***
28293284-T-C 26147137-T-C P1_b4 ***
28293266-T-C 26147119-T-C P1_b4 ***
28027960-C-T 25881813-C-T P1_Y2 ***
28008078-T-A 25861931-T-A P1_Y2 ***
28008071-T-G 25861924-T-G P1_Y2 ***
27872528-G-A 25726381-G-A P1_Y2 ***
27872517-C-A 25726370-C-A P1_Y2 ***
27872495-G-A 25726348-G-A P1_Y2 ***
27714328-C-T 25568181-C-T P1_Y2 15×T***
27016157-C-T 24870010-C-T P1_r4 ***
18369705-A-G 16257825-A-G P6_Prx ***
19330184-G-T 17218304-G-T ***
7084498-C-A 7216457-C-A ***
7383846-T-C 7515805-T-C ***
7383844-C-T 7515803-C-T ***
7381628-C-A 7513587-C-A ***
7311836-C-A 7443795-C-A ***
7307851-A-G 7439810-A-G ***
7166515-C-A 7298474-C-A ***
7160569-C-A 7292528-C-A ***
7116135-C-A 7248094-C-A ***
7111789-C-A 7243748-C-A ***
7107436-C-A 7239395-C-A ***
7100091-C-A 7232050-C-A ***
7030914-C-A 7162873-C-A ***
7428142-A-C 7560101-A-C ***
6948226-C-A 7080185-C-A ***
6828549-C-A 6960508-C-A ***
6828523-C-A 6960482-C-A ***
6714497-C-A 6846456-C-A ***
6642578-C-A 6774537-C-A ***
6509565-C-A 6641524-C-A ***
6471372-C-A 6603331-C-A ***
6414349-C-A 6546308-C-A ***
6403692-G-T 6535651-G-T ***
6402804-C-A 6534763-C-A ***
6298772-T-C 6430731-T-C IR3_Dst ***
7423697-C-A 7555656-C-A ***
7428171-A-C 7560130-A-C ***
6246915-A-T 6378874-A-T IR3_Dst ***
9540246-C-T 9702637-C-T IR3_Prx 18×T***
9942949-T-A 10105340-T-A ***
9940888-T-C 10103279-T-C ***
9940805-C-A 10103196-C-A ***
9750687-T-G 9913078-T-G ***
9712962-T-A 9875353-T-A IR3_Prx ***
9707400-A-G 9869791-A-G IR3_Prx ***
9707361-T-G 9869752-T-G IR3_Prx ***
9707326-T-G 9869717-T-G IR3_Prx ***
9602730-T-G 9765121-T-G IR3_Prx ***
9564490-T-G 9726881-T-G IR3_Prx ***
9564485-T-G 9726876-T-G IR3_Prx ***
9402587-C-A 9564978-C-A ***
7490092-C-A 7622051-C-A IR1_L ***
9365773-A-G 9528164-A-G ***
9365761-T-G 9528152-T-G ***
9365755-T-G 9528146-T-G ***
9355440-A-G 9517831-A-G ***
9347422-A-G 9509813-A-G ***
9345062-T-G 9507453-T-G ***
9344064-A-C 9506455-A-C ***
9344043-A-C 9506434-A-C ***
9344034-A-C 9506425-A-C ***
8389723-C-A 8521682-C-A ***
7577977-T-C 7709936-T-C ***
7490578-A-C 7622537-A-C IR1_L ***
6246925-A-T 6378884-A-T IR3_Dst ***
6246897-A-C 6378856-A-C IR3_Dst ***
9944963-G-A 10107354-G-A ***
22441666-T-A 20279780-T-A DYZ19 ******
58985182-G-T 56839035-G-T ***
17629796-T-C 15517916-T-C ***
10064309-C-T 10226700-C-T ***
10064335-T-C 10226726-T-C ***
10064327-C-G 10226718-C-G ***
2758748-T-A 2890707-T-A ***
28807706-G-A 26661559-G-A ***
26102008-C-T 23955861-C-T P1_Y1 ******
26064837-C-A 23918690-C-A P1_Y1 ***
24213969-CTTAATA-C 22067822-CTTAATA-C P3_b1 ***
24212724-A-C 22066577-A-C P3_b1 ******
22433018-G-T 20271132-G-T DYZ19 ***
22473640-C-T 20311754-C-T DYZ19 ***
22346721-C-T 20184835-C-T DYZ19 ******
22303786-C-A 20141900-C-A DYZ19 ***
22298470-T-A 20136584-T-A DYZ19 ***
22289581-G-T 20127695-G-T DYZ19 ***
13509654-G-T 11353978-G-T ***
5179541-T-C 5311500-T-C Z38491 8×AC***
10048601-GCTT-CCTA 10210992-GCTT-CCTA ***
13739747-T-G 11584071-T-G ***
18354216-AAG-A 16242336-AAG-A P6_Prx ***
13733372-A-G 11577696-A-G ***
9311499-T-G 9473890-T-G ***
25889836-G-GTAA 23743689-G-GTAA P1_Y1 9×TAA***
22302505-C-G 20140619-C-G BY40095 DYZ19 ***
2758620-T-A 2890579-T-A ***
6246870-A-C 6378829-A-C IR3_Dst ***
4969686-G-T 5101645-G-T ***
6246860-A-C 6378819-A-C IR3_Dst ***
6213709-C-T 6345668-C-T IR3_Dst ***
5873871-C-A 6005830-C-A ***
5864653-T-C 5996612-T-C ***
5863954-C-A 5995913-C-A ***
5824172-C-A 5956131-C-A ***
5294351-C-A 5426310-C-A ***
5267020-C-A 5398979-C-A ***
5199815-C-A 5331774-C-A ***
5172095-C-A 5304054-C-A ***
5170236-A-T 5302195-A-T ***
4959824-C-A 5091783-C-A ***
2769703-G-T 2901662-G-T ***
4951459-C-T 5083418-C-T ***
4874297-T-A 5006256-T-A ***
4271315-C-A 4403274-C-A ***
4262437-C-A 4394396-C-A ***
4243714-A-C 4375673-A-C ***
4208690-C-A 4340649-C-A ***
3389912-T-C 3521871-T-C ***
3340941-G-A 3472900-G-A ***
3060960-A-T 3192919-A-T ***
2803629-C-A 2935588-C-A ***
2784473-C-A 2916432-C-A ***
2773498-C-T 2905457-C-T ***
9944956-A-T 10107347-A-T ***
9945500-A-T 10107891-A-T ***
19248303-C-A 17136423-C-A ***
15773517-G-T 13661637-G-T ***
16941548-C-A 14829668-C-A ***
16705395-C-A 14593515-C-A ***
16540097-G-T 14428217-G-T ***
16516250-C-A 14404370-C-A ***
16292609-C-T 14180729-C-T ***
16270986-C-A 14159106-C-A ***
16241483-T-A 14129603-T-A ***
16118208-A-G 14006328-A-G P8_Prx ***
16113102-T-G 14001222-T-G P8_Prx ***
16107522-A-T 13995642-A-T P8_Prx ***
16029013-C-A 13917133-C-A ***
15773507-T-C 13661627-T-C ***
17042694-C-A 14930814-C-A ***
15746080-C-A 13634200-C-A ***
15655450-G-A 13543570-G-A ***
15532593-T-A 13420713-T-A ***
15397194-A-G 13285314-A-G ***
15179854-G-T 13067940-G-T ***
15084563-C-A 12972653-C-A ***
15066214-C-A 12954305-C-A ***
15012664-T-C 12900752-T-C ***
14992506-C-A 12880591-C-A ***
14784797-C-T 12672867-C-T ***
14764956-C-A 12653025-C-A ***
16942136-C-A 14830256-C-A ***
17098564-C-A 14986684-C-A ***
14562380-C-A 12450580-C-A ***
18369731-A-G 16257851-A-G P6_Prx ***
19155941-C-A 17044061-C-A ***
19040874-G-T 16928994-G-T ***
18959136-A-C 16847256-A-C ***
18933726-C-A 16821846-C-A ***
18928637-C-T 16816757-C-T ***
18926870-C-A 16814990-C-A ***
18819341-A-G 16707461-A-G ***
18752895-C-A 16641015-C-A ***
18468408-T-G 16356528-T-G P6_Dst ***
18447620-A-T 16335740-A-T P6_Dst ***
18375975-A-G 16264095-A-G P6_Prx ***
18369727-C-G 16257847-C-G P6_Prx ***
17103948-C-A 14992068-C-A ***
18369724-A-C 16257844-A-C P6_Prx ***
18369709-A-G 16257829-A-G P6_Prx ***
24807426-G-A 22661279-G-A P3_b2 ***
18304398-T-C 16192518-T-C P6_Prx ***
18304366-G-C 16192486-G-C P6_Prx ***
18187687-C-A 16075807-C-A ***
18089400-C-A 15977520-C-A ***
18079291-C-A 15967411-C-A ***
18041608-G-T 15929728-G-T ***
17953931-A-G 15842051-A-G ***
17629692-G-A 15517812-G-A ***
17597955-C-A 15486075-C-A ***
14563046-C-A 12451246-C-A ***
14561285-G-T 12449486-G-T ***
9952674-T-A 10115065-T-A ***
13347972-C-A 11192296-C-A ***
13494328-C-A 11338652-C-A ***
13494118-C-A 11338442-C-A ***
13461245-G-T 11305569-G-T ***
13461201-G-A 11305525-G-A ***
13461200-A-G 11305524-A-G ***
13461180-A-G 11305504-A-G ***
13461165-G-T 11305489-G-T ***
13460502-T-A 11304826-T-A ***
13437247-G-C 11281571-G-C ***
13435051-C-G 11279375-C-G ***
13429924-G-T 11274248-G-T ***
13326027-A-C 11170351-A-C ***
13513558-C-A 11357882-C-A ***
13325299-G-A 11169623-G-A ***
13325292-C-G 11169616-C-G ***
13325275-A-G 11169599-A-G ***
13305639-T-G 11149963-T-G ***
13291361-A-G 11135685-A-G ***
13291356-T-C 11135680-T-C ***
13255390-C-A 11099714-C-A ***
13239447-A-T 11083771-A-T ***
10064274-G-T 10226665-G-T ***
10064226-G-T 10226617-G-T ***
10011768-C-T 10174159-C-T ***
9974158-G-A 10136549-G-A FGC32303 ZS9810 ***
13513035-C-A 11357359-C-A ***
13547007-C-A 11391331-C-A ***
14516806-A-G 12405007-A-G ***
13935989-C-A 11815283-C-A ***
14490777-T-C 12370046-T-C ***
14490233-T-C 12369502-T-C ***
14490225-A-G 12369494-A-G ***
14490216-T-G 12369485-T-G ***
14372031-C-A 12251327-C-A ***
14074406-C-A 11953700-C-A ***
14074315-G-A 11953609-G-A ***
14035957-C-A 11915251-C-A ***
13996573-C-A 11875867-C-A ***
13946139-C-A 11825433-C-A ***
13937509-A-G 11816803-A-G ***
13887613-C-A 11766907-C-A ***
13552721-C-T 11397045-C-T ***
13744806-T-G 11589130-T-G ***
13741474-A-C 11585798-A-C ***
13739741-C-T 11584065-C-T ***
13739548-G-C 11583872-G-C ***
13733634-C-A 11577958-C-A ***
13733628-A-G 11577952-A-G ***
13733614-A-G 11577938-A-G ***
13708068-A-G 11552392-A-G ***
13637263-C-A 11481587-C-A ***
13603217-C-A 11447541-C-A ***
13603141-C-A 11447465-C-A ***
13585200-C-A 11429524-C-A ***
19500593-GAGAA-G,GAGAAAGAA 17388713-GAGAA-G,GAGAAAGAA 15×AGAA***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

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