Lazovic
Kane-BY3: IN104198MDKA Birth: Serbia > Moravica District 1961
Tree Position
Unique Mutations
The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.
Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.
POS-REF-ALT (hg19) | POS-REF-ALT (hg38) | Blocks | Names | Region | McDonald BED | combBED | STR | Kane-BY3 IN104198 |
---|---|---|---|---|---|---|---|---|
14515310-A-AAGAT | 12403515-A-AAGATAGAT | 13×AGAT | + | |||||
13142409-CCA-C | 10631895-CCA-C | + | ||||||
19126436-C-CAAAAAAAAAAAAA | 17014556-C-CAAAAAAAAAAAAA | 25×A | + | |||||
16814263-G-A | 14702383-G-A | Z36042 | Y | + | ||||
13842730-GTGGAATGGAA-G | 11722024-GTGGAATGGAA-G | 12×TGGAA | + | |||||
10915917-T-A | + | |||||||
10757171-TTCCA-T | + | |||||||
18518292-TGG-T | 16406412-TGG-T | P6_Dst | + | |||||
13637769-T-G | 11482093-T-G | + | ||||||
2776845-C-A | 2908804-C-A | FTB59444 | Y | Y | + | |||
4144288-T-G | 4276247-T-G | FTB65387 | + | |||||
4826403-TATA-T | 4958362-TATA-T | + | ||||||
5154198-A-G | 5286157-A-G | FT45847 | + | |||||
5562588-A-G | 5694547-A-G | BY169079 | + | |||||
5731247-T-C | 5863206-T-C | FT107142 | + | |||||
6050237-A-G | 6182196-A-G | FT407280 | + | |||||
6402450-T-C | 6534409-T-C | + | ||||||
6434267-G-A | 6566226-G-A | FT1482 | + | |||||
7053761-C-T | 7185720-C-T | FTB59536 | Y | Y | + | |||
7893329-A-G | 8025288-A-G | Y | Y | + | ||||
8309006-G-A | 8440965-G-A | FTB59736 | Y | Y | + | |||
8416242-T-G | 8548201-T-G | FTB59754 | Y | Y | + | |||
9871174-A-G | 10033565-A-G | FT407780 | Y | Y | + | |||
10631899-G-GTT | + | |||||||
10944684-C-CAT | + | |||||||
11673606-G-A | + | |||||||
14524139-T-C | 12412340-T-C | FTB60076 | Y | Y | + | |||
12450522-C-CTTTTTTTTT | 41×T | + | ||||||
15152271-C-T | 13040358-C-T | Y | Y | + | ||||
15255361-C-T | 13143447-C-T | FT408027 | Y | Y | + | |||
16418571-GCC-G | 14306691-GCC-G | + | ||||||
17320652-G-A | 15208772-G-A | FTB60522 | Y | Y | + | |||
17877642-G-T | 15765762-G-T | FTB60626 | Y | Y | + | |||
18679925-C-CAAAAAAAAAAAAAAAAAAAAAA | 16568045-C-CAAAAAAAAAAAAAAAAAAAAAA | 25×A | + | |||||
18703847-G-A | 16591967-G-A | FTB60745 | Y | Y | + | |||
18982547-C-CAAAAAAAAA | 16870667-C-CAAAAAAAAA | 39×A | + | |||||
18995562-A-G | 16883682-A-G | FTB60808 | Y | Y | + | |||
19436718-AAGAAAGAAAGAAAGAAAGAAAG-A | 17324838-AAGAAAGAAAGAAAGAAAGAAAG-A | + | ||||||
22272931-A-C | 20111045-A-C | DYZ19 | + | |||||
22475082-G-A | 20313196-G-A | FT459697 | DYZ19 | + | ||||
22950363-A-AT | 20788477-A-AT | + | ||||||
23311196-TTTCTTTCTTTCC-T | 21149310-TTTCTTTCTTTCC-T | + | ||||||
23458751-C-T | 21296865-C-T | FTA13478 | Y | Y | + | |||
21757475-T-G | + | |||||||
24386133-T-A | 22239986-T-A | + | ||||||
25963902-G-GTGT | 23817755-G-GTGT | P1_Y1 | + | |||||
28787311-G-A | 26641164-G-A | * | ||||||
22715327-TA-T | 20553441-TA-T | 9×A | * | |||||
16535053-C-CT | 14423173-C-CT | 35×T | * | |||||
21824255-C-CAAAAA | 19662369-C-CAAAAA | 30×A | * | |||||
14251935-TA-T | 12131229-TA-T | 10×A | * | |||||
8755817-GGAGA-G | 8887776-GGAGA-G | 12×GA | * | |||||
6080638-TTC-T | 6212597-TTC-T | 9×TC | * | |||||
20931853-A-G | 18769967-A-G | BY44836 | P4_Dst | 18×TG | * | |||
23860084-CA-C | 21698198-CA-C | 9×A | * | |||||
19042179-CAAAA-C | 16930299-CAAAA-C | 17×A | * | |||||
19513578-ATTTTT-A | 17401698-ATTTTT-A | 20×T | * | |||||
16205774-C-A | 14093894-C-A | Y | Y | * | ||||
3428687-GATAT-G | 3560646-GATAT-G | 22×AT | * | |||||
17441215-TAC-T | 15329335-TAC-T | * | ||||||
8369376-TTTA-T | 8501335-TTTA-T | 8×TTA | * | |||||
3963833-CAAAA-C | 4095792-CAAAA-C | 22×A | * | |||||
13478020-C-T | 11322344-C-T | * | ||||||
7542819-GA-G | 7674778-GA-G | 10×A | * | |||||
16308516-T-G | 14196636-T-G | Y | Y | * | ||||
20819998-CT-C,CTT | 18658112-CT-C,CTT | P4_Gap | 21×T | * | ||||
21468743-G-T | 19306857-G-T | F24338 | Y | Y | * | |||
10662144-C-T | * | |||||||
10662146-G-T | * | |||||||
16186706-C-CA | 14074826-C-CA | 9×A | * | |||||
6044426-TA-T | 6176385-TA-T | 9×A | * | |||||
8293894-TA-T | 8425853-TA-T | 8×A | * | |||||
56880582-TA-T | 9×A | * | ||||||
14552175-TAA-T | 12440376-TAA-T | 13×A | * | |||||
8666722-AG-A | 8798681-AG-A | * | ||||||
17951326-C-T | 15839446-C-T | YFS251288 A6254 | Y | Y | * | |||
15595608-C-CT | 13483728-C-CT | 9×T | * | |||||
10837564-G-C | * | |||||||
10837567-C-G | * | |||||||
10837571-T-A | * | |||||||
17597154-CTT-C,CT | 15485274-CTT-C,CT | 20×T | * | |||||
23081490-ATT-A | 20919604-ATT-A | 12×T | * | |||||
6648649-C-A | 6780608-C-A | Y | Y | * | ||||
22185943-CTTT-C | 20024057-CTTT-C | 13×T | * | |||||
27861908-C-A | 25715761-C-A | P1_Y2 | * | |||||
2740721-AT-A | 2872680-AT-A | 10×T | * | |||||
24884136-G-T | 22737989-G-T | g1 | * | |||||
17734039-C-CA | 15622159-C-CA | 10×A | * | |||||
4130259-TA-T | 4262218-TA-T | 10×A | * | |||||
18534203-C-T | 16422323-C-T | P6_Dst | * | |||||
2859024-G-T | 2990983-G-T | Y | Y | * | ||||
18346473-C-CTG,CTGTG | 16234593-C-CTG,CTGTG | P6_Prx | 22×TG | * | ||||
17192624-CA-C | 15080744-CA-C | 8×A | * | |||||
23827530-TA-T | 21665644-TA-T | 9×A | * | |||||
19486859-CTTT-C,CTT | 17374979-CTTT-C,CTT | 16×T | * | |||||
24872697-GT-G | 22726550-GT-G | IR1_R | 11×T | * | ||||
15323680-G-T | 13211798-G-T | Y | Y | * | ||||
3600330-G-GA | 3732289-G-GA | 9×A | * | |||||
11649492-G-A | * | |||||||
9956421-G-GA | 10118812-G-GA | 9×A | * | |||||
8808694-C-A | 8940653-C-A | Y | Y | * | ||||
16682626-TC-T | 14570746-TC-T | * | ||||||
16244792-GGTGTGTGT-G,GGTGT | 14132912-GGTGTGTGT-G,GGTGT | 16×GT | * | |||||
13462544-G-A | 11306868-G-A | * | ||||||
2915056-CTTCT-C | 3047015-CTTCT-C | 4×TTCT | * | |||||
13478012-C-A | 11322336-C-A | * | ||||||
15507783-GTTT-G | 13395903-GTTT-G | 25×T | * | |||||
6634260-T-A | 6766219-T-A | Y | Y | * | ||||
6765598-C-A | 6897557-C-A | Y | Y | * | ||||
8465992-C-A | 8597951-C-A | Y | Y | * | ||||
10678220-A-T | * | |||||||
7098902-TA-T,TAA | 7230861-TA-T,TAA | 16×A | * | |||||
10813391-C-A | * | |||||||
16693136-C-CT | 14581256-C-CT | 10×T | * | |||||
23789324-G-GTT | 21627438-G-GTT | 13×T | * | |||||
8214887-G-T | 8346846-G-T | Y | Y | * | ||||
10884012-T-G | * | |||||||
16531083-CAAAAA-C | 14419203-CAAAAA-C | 24×A | * | |||||
18255155-CAA-C | 16143275-CAA-C | 12×A | * | |||||
7515265-C-CA | 7647224-C-CA | 9×A | * | |||||
10678227-C-A | * | |||||||
20104256-GGA-G | 17992376-GGA-G | P5_Dst | 22×GA | * | ||||
10678224-C-T | * | |||||||
19492290-CAAAAAA-C | 17380410-CAAAAAA-C | 37×A | * | |||||
8214897-C-A | 8346856-C-A | Y | Y | * | ||||
21402222-C-A | 19240336-C-A | Y | Y | * | ||||
10798343-T-C | * | |||||||
13962042-CTT-C,CTTT | 11841336-CTT-C,CTTT | 28×T | * | |||||
21122953-GA-G | 18961067-GA-G | 10×A | * | |||||
10783525-G-A | * | |||||||
17574408-A-AT | 15462528-A-AT | 9×T | * | |||||
17323598-G-A | 15211718-G-A | Y | Y | * | ||||
8465975-G-T | 8597934-G-T | Y | Y | * | ||||
14280236-C-CT | 12159530-C-CT | 9×T | * | |||||
28461722-CTTTTT-C | 26315575-CTTTTT-C | 19×T | * | |||||
16429719-T-C | 14317839-T-C | Y | * | |||||
22700501-C-CT | 20538615-C-CT | 10×T | * | |||||
19239050-TTATCTATC-T,TTATC | 17127170-TTATCTATC-T,TTATC | 12×TATC | * | |||||
11021478-A-T | * | |||||||
6992182-A-C | 7124141-A-C | Y | Y | * | ||||
16382748-TA-T | 14270868-TA-T | 10×A | * | |||||
11010565-G-T | * | |||||||
8020220-G-C | 8152179-G-C | Y | Y | * | ||||
10646003-T-C | * | |||||||
10672221-CTCCAT-C | * | |||||||
7235831-GTT-G,GTTT | 7367790-GTT-G,GTTT | 29×T | * | |||||
10893379-TTTCCA-T | * | |||||||
26101362-C-CAA | 23955215-C-CAA | P1_Y1 | 17×A | * | ||||
17561990-GTTT-G,GTT | 15450110-GTTT-G,GTT | 17×T | * | |||||
27998517-G-T | 25852370-G-T | P1_Y2 | * | |||||
12903343-CTTTT-C,CTTT | 25×T | * | ||||||
18626582-CTT-C,CTTTT | 16514702-CTT-C,CTTTT | 25×T | * | |||||
3270924-AT-A,ATT | 3402883-AT-A,ATT | 25×T | * | |||||
5937248-A-C | 6069207-A-C | * | ||||||
28786360-C-G | 26640213-C-G | * | ||||||
15449892-CT-C,CTT | 13338012-CT-C,CTT | 21×T | * | |||||
2809975-CTGTG-C | 2941934-CTGTG-C | 14×TG | * | |||||
7128621-CGTGTGT-C,CGT | 7260580-CGTGTGT-C,CGT | 23×GT | * | |||||
5198612-G-A | 5330571-G-A | * | ||||||
7282147-A-T | 7414106-A-T | Y | * | |||||
9942043-ATT-A,AT | 10104434-ATT-A,AT | 28×T | * | |||||
13478057-A-G | 11322381-A-G | * | ||||||
2924651-C-T | 3056610-C-T | * | ||||||
4251033-CT-C,CTT | 4382992-CT-C,CTT | 24×T | * | |||||
5399016-ATTTT-A | 5530975-ATTTT-A | 18×T | * | |||||
23098816-CAAA-C,CAA | 20936930-CAAA-C,CAA | 25×A | * | |||||
13255809-TGG-T,TGGG | 11100133-TGG-T,TGGG | 12×G | * | |||||
19391099-CT-C,CTT | 17279219-CT-C,CTT | 17×T | * | |||||
16641872-C-CAT,CATAT | 14529992-C-CAT,CATAT | 12×AT | * | |||||
22537275-CAA-C,CAAA | 20375389-CAA-C,CAAA | 15×A | * | |||||
13478054-G-C | 11322378-G-C | * | ||||||
13478064-G-A | 11322388-G-A | * | ||||||
8482269-CA-C | 8614228-CA-C | 8×A | * | |||||
3887957-GT-G | 4019916-GT-G | 10×T | * | |||||
26415749-GT-G | 24269602-GT-G | P1_Y1 | 14×T | * | ||||
23041198-GAAA-G | 20879312-GAAA-G | 34×A | * | |||||
8379577-CTGTGTGTG-C,CTG | 8511536-CTGTGTGTG-C,CTG | 18×TG | * | |||||
21366261-C-CA | 19204375-C-CA | 9×A | * | |||||
9120876-ATTTTT-A | * | |||||||
3229154-CAA-C,CA | 3361113-CAA-C,CA | 20×A | * | |||||
6712730-C-CT | 6844689-C-CT | 9×T | * | |||||
18825629-CAAAA-C,CAAA | 16713749-CAAAA-C,CAAA | 20×A | * | |||||
3571752-GTTTTTTTTTTTTTTTTTTTTTTTTTTT-G,GT | 3703711-GTTTTTTTTTTTTTTTTTTTTTTTTTTT-G,GT | 45×T | * | |||||
21946945-A-AT,ATT | 19785059-A-AT,ATT | 15×T | * | |||||
5170746-TA-T | 5302705-TA-T | 9×A | * | |||||
4367394-G-GA | 4499353-G-GA | 9×A | * | |||||
8888611-A-AAC | 9020570-A-AAC | * | ||||||
8099747-C-A | 8231706-C-A | Y | Y | * | ||||
8218120-CTTCTTTCT-C,CTTCT | 8350079-CTTCTTTCT-C,CTTCT | 15×TTCT | * | |||||
56880198-T-A | * | |||||||
26024568-G-T | 23878421-G-T | P1_Y1 | * | |||||
11296305-A- | * | |||||||
11296323-AATCCACTCCAATCCATTCCACTCCAGTCCATTCCAATCCATTCCACTCTACGCCATAACATTAAG- | * | |||||||
16842867-A-ATG,ATGTG | 14730987-A-ATG,ATGTG | 22×TG | * | |||||
13356629-G-GAA | 11200953-G-GAA | 11×A | * | |||||
56835865-G-A,A | * | |||||||
5453891-CT-C,CTT | 5585850-CT-C,CTT | 19×T | * | |||||
3532371-C-A | 3664330-C-A | * | ||||||
2670599-A-G | 2802558-A-G | Y | * | |||||
2670617-CT-C | 2802576-CT-C | * | ||||||
2685644-C-CT,CTT | 2817603-C-CT,CTT | 20×T | * | |||||
2708411-CGAGA-C,CGAGAGA | 2840370-CGAGA-C,CGAGAGA | 23×GA | * | |||||
2747768-CATATATATATATAAATAAATAT-C | 2879727-CATATATATATATAAATAAATAT-C | * | ||||||
2824700-T-C | 2956659-T-C | Y | Y | * | ||||
2827954-T-A | 2959913-T-A | Y | Y | * | ||||
2941758-G-C | 3073717-G-C | * | ||||||
3015575-T-TAC,TACAC | 3147534-T-TAC,TACAC | 17×AC | * | |||||
3029725-AC-A | 3161684-AC-A | * | ||||||
3349229-CAAAAAA-C | 3481188-CAAAAAA-C | 22×A | * | |||||
3392512-A-G | 3524471-A-G | * | ||||||
3561527-C-CA | 3693486-C-CA | * | ||||||
3561528-T-A,TA | 3693487-T-A,TA | * | ||||||
3623475-A-AAT | 3755434-A-AAT | * | ||||||
3700107-TA-T,T | 3832066-TA-T,T | 15×A | * | |||||
3769067-CT-C | 3901026-CT-C | 8×T | * | |||||
3895609-T-C | 4027568-T-C | * | ||||||
3952340-T-TGAGAGA | 4084299-T-TGAGAGA | 20×GA | * | |||||
4100974-C-A | 4232933-C-A | * | ||||||
4100982-G-T | 4232941-G-T | * | ||||||
4136680-A-ACT,T | 4268639-A-ACT,T | * | ||||||
4200055-CAA-C,CAAAA | 4332014-CAA-C,CAAAA | 23×A | * | |||||
4207957-CAAAA-C,CAA | 4339916-CAAAA-C,CAA | 22×A | * | |||||
4213860-ATGTGTG-A,ATG | 4345819-ATGTGTG-A,ATG | 12×TG | * | |||||
4269140-A-T | 4401099-A-T | * | ||||||
4392282-C-CAAAAAA | 4524241-C-CAAAAAA | 45×A | * | |||||
4415373-T-C | 4547332-T-C | FT16449 | * | |||||
4429373-C-T | 4561332-C-T | * | ||||||
4443221-T-C,C | 4575180-T-C,C | * | ||||||
4460009-A-ATATATC | 4591968-A-ATATATC | * | ||||||
4470945-C-T | 4602904-C-T | * | ||||||
4636106-A-AAT,AT | 4768065-A-AAT,AT | 13×AT | * | |||||
4636134-C-A | 4768093-C-A | * | ||||||
4752105-TTGTG-T,TTGTGTG | 4884064-TTGTG-T,TTGTGTG | 17×TG | * | |||||
4932707-TTG-T,TTGTG | 5064666-TTG-T,TTGTG | 17×TG | * | |||||
5053123-G-GT | 5185082-G-GT | * | ||||||
5147441-C-CA,CAA | 5279400-C-CA,CAA | 30×A | * | |||||
5172202-T-TA,TA | 5304161-T-TA,TA | 10×A | * | |||||
5252833-A-AT | 5384792-A-AT | 16×T | * | |||||
5260410-C-CA,CAA | 5392369-C-CA,CAA | 20×A | * | |||||
5354751-TATATATATATATATATACAC-T | 5486710-TATATATATATATATATACAC-T | * | ||||||
5784600-A-AT,ATAT | 5916559-A-AT,ATAT | * | ||||||
5797434-GATATAT-G,GAT | 5929393-GATATAT-G,GAT | 21×AT | * | |||||
5937252-A-C,C | 6069211-A-C,C | * | ||||||
5966890-GTTT-G | 6098849-GTTT-G | 14×T | * | |||||
6020688-GTT-G,GTTT | 6152647-GTT-G,GTTT | 23×T | * | |||||
6045077-A-T | 6177036-A-T | * | ||||||
6092948-C-CTTTTTTT,CTTTTTTT | 6224907-C-CTTTTTTT,CTTTTTTT | 39×T | * | |||||
6120389-GTA-G | 6252348-GTA-G | * | ||||||
6597369-C-A | 6729328-C-A | FT123764 | * | |||||
6634261-T-A | 6766220-T-A | Y | Y | * | ||||
6648613-CT-C,TT | 6780572-CT-C,TT | 27×T | * | |||||
6768885-C-CGTTT | 6900844-C-CGTTT | 17×T | * | |||||
6776497-CA-C,CAA | 6908456-CA-C,CAA | 28×A | * | |||||
6808295-C-CAA | 6940254-C-CAA | 13×A | * | |||||
6865459-CAA-C | 6997418-CAA-C | 10×A | * | |||||
6967768-CA-C | 7099727-CA-C | * | ||||||
6992181-A-C | 7124140-A-C | Y | Y | * | ||||
6992183-A-C | 7124142-A-C | Y | Y | * | ||||
7107067-T-G | 7239026-T-G | Y | Y | * | ||||
7270947-T-A | 7402906-T-A | BY64291 | Y | Y | * | |||
7758491-GTTTT-G | 7890450-GTTTT-G | 17×T | * | |||||
8030056-AGAACTACAAT-A | 8162015-AGAACTACAAT-A | * | ||||||
8258262-TATTTTA- | * | |||||||
8166921-T-C | 8298880-T-C | Y | * | |||||
8197934-T-C | 8329893-T-C | Y | Y | * | ||||
8366606-G-A | 8498565-G-A | Y | Y | * | ||||
8426377-G-GCTTCTTCTTCTTCTTCTTCTTCTT | 8558336-G-GCTTCTTCTTCTTCTTCTTCTTCTT | 22×CTT | * | |||||
8549055-T-TG | 8681014-T-TG | * | ||||||
8549064-A-T | 8681023-A-T | Y | Y | * | ||||
8556624-G-A | 8688583-G-A | Y | Y | * | ||||
8575956-A-ATTTTTTTTTTT,ATTTTTTTTTTT | 8707915-A-ATTTTTTTTTTT,ATTTTTTTTTTT | 28×T | * | |||||
8589494-GAAA-G | 8721453-GAAA-G | 12×A | * | |||||
8644324-C-CAA,CAAAAAA | 8776283-C-CAA,CAAAAAA | 32×A | * | |||||
8734222-CA-C,C | 8866181-CA-C,C | 14×A | * | |||||
8747696-TGAGA-T,T | 8879655-TGAGA-T,T | 18×GA | * | |||||
8816787-A-T | 8948746-A-T | Y | * | |||||
8879474-G-A | 9011433-G-A | Y | * | |||||
8893355-G-T | 9025314-G-T | Y | * | |||||
9139952-A-C | 9302343-A-C | Y | * | |||||
9427754-G-T | 9590145-G-T | Y | Y | * | ||||
9459384-T-TTGTGTG,TTGTGTGTG | 9621775-T-TTGTGTG,TTGTGTGTG | 18×TG | * | |||||
9790078-A-G | 9952469-A-G | Y | * | |||||
9868439-T-TAA | 10030830-T-TAA | 9×A | * | |||||
9986507-TA-T | 10148898-TA-T | 9×A | * | |||||
10040832-C-T | 10203223-C-T | * | ||||||
10043594-GA-G | 10205985-GA-G | * | ||||||
10063570-C-A | 10225961-C-A | * | ||||||
10627324-A-T | * | |||||||
10627325-T-C | * | |||||||
10658200-T-A | * | |||||||
10663220-C-T | * | |||||||
10673071-G- | * | |||||||
10678231-T-C | * | |||||||
10759687-A-G | * | |||||||
10771274-C-A | * | |||||||
10837867-T-A | FT433491 | * | ||||||
10837868-TTG-T | * | |||||||
10884008-A-T | * | |||||||
10884011-A-T | * | |||||||
10902576-A-G | * | |||||||
10904343-G-A | * | |||||||
10919344-T-C | * | |||||||
10919352-G-C | * | |||||||
10924646-G-C | * | |||||||
10939748-A-G | * | |||||||
10969639-G-A | * | |||||||
10992155-A-C | * | |||||||
11010566-C-T | * | |||||||
11010574-A-C | * | |||||||
11015702-C-T | * | |||||||
11018714-T-G | * | |||||||
13401398-A-G | 11245722-A-G | * | ||||||
13417221-CA-C | 11261545-CA-C | 9×A | * | |||||
13449976-C-G | 11294300-C-G | * | ||||||
13451163-T-TCCTCTGCACTCC | 11295487-T-TCCTCTGCACTCC | * | ||||||
13462517-G-T | 11306841-G-T | * | ||||||
13462519-C-T | 11306843-C-T | * | ||||||
13462538-C-T | 11306862-C-T | * | ||||||
13462571-A-T | 11306895-A-T | * | ||||||
13596181-C-T | 11440505-C-T | * | ||||||
13655756-TAAAAGG-T | 11500080-TAAAAGG-T | * | ||||||
13669483-GATGGAATGGA-G,GATGGA | 11513807-GATGGAATGGA-G,GATGGA | 10×ATGGA | * | |||||
13826625-C-G | 11705919-C-G | * | ||||||
13864291-TAATGG-T | 11743585-TAATGG-T | 4×AATGG | * | |||||
13992191-CAAAAA-C,CAAAAAA | 11871485-CAAAAA-C,CAAAAAA | 22×A | * | |||||
14013931-A-G | 11893225-A-G | Y | * | |||||
14062010-C-CAAA,CAAA | 11941304-C-CAAA,CAAA | 34×A | * | |||||
14114917-A-G | 11994211-A-G | Y | Y | * | ||||
14134709-T-C | 12014003-T-C | Y | * | |||||
14299366-CT-C | 12178660-CT-C | 9×T | * | |||||
14331131-CTTT-C,CTTTT | 12210425-CTTT-C,CTTTT | 25×T | * | |||||
14371896-A-C | 12251192-A-C | Y | * | |||||
14464931-T-G | 12344204-T-G | Y | Y | * | ||||
12555882-CAAAA-C,CA | 24×A | * | ||||||
14674250-T-C | 12562316-T-C | Y | * | |||||
14746193-AAAG-A | 12634262-AAAG-A | * | ||||||
14797320-GAA-G | 12685391-GAA-G | 13×A | * | |||||
12899386-AAATAATAAT-A,AAAT | 16×AAT | * | ||||||
15084488-A-T | 12972578-A-T | Y | Y | * | ||||
15410633-CA-C,CAA | 13298753-CA-C,CAA | 28×A | * | |||||
15683628-CAAA-C,CAA | 13571748-CAAA-C,CAA | 24×A | * | |||||
15904149-CAAAA-C,CAAA | 13792269-CAAAA-C,CAAA | 20×A | * | |||||
15909050-CCATTCATT-C,CCATT | 13797170-CCATTCATT-C,CCATT | 9×CATT | * | |||||
15920388-C-T | 13808508-C-T | Y | * | |||||
16034917-G-T | 13923037-G-T | Y | * | |||||
16074805-TAC-T | 13962925-TAC-T | * | ||||||
16308486-CTT-C,CTTTT | 14196606-CTT-C,CTTTT | 25×T | * | |||||
16627726-G-A,GTA | 14515846-G-A,GTA | 10×TA | * | |||||
16692757-GAA-G,GAAA | 14580877-GAA-G,GAAA | 27×A | * | |||||
16843773-C-CA,CA | 14731893-C-CA,CA | 8×A | * | |||||
16908451-TA-T,TAAA | 14796571-TA-T,TAAA | 21×A | * | |||||
17005670-A-C | 14893790-A-C | Y | Y | * | ||||
17122246-A-AT,ATT | 15010366-A-AT,ATT | 9×T | * | |||||
17250312-A-G | 15138432-A-G | Y | * | |||||
17299921-C-CATAG,CATAGATAG | 15188041-C-CATAG,CATAGATAG | 12×ATAG | * | |||||
17301262-G-C | 15189382-G-C | Y | Y | * | ||||
17459485-CAAAA-C,CAAAAAAA | 15347605-CAAAA-C,CAAAAAAA | 25×A | * | |||||
15432081-TTA- | * | |||||||
17543962-T-A | 15432082-T-A | Y | Y | 11×A | * | |||
17703255-A-AAAAGAAAG,AAAGAAAG | 15591375-A-AAAAGAAAG,AAAGAAAG | 6×AAAG | * | |||||
17732693-C-A | 15620813-C-A | Y | * | |||||
15749455-T- | * | |||||||
17870111-T-TAC | 15758231-T-TAC | 8×AC | * | |||||
18038962-G-GAA | 15927082-G-GAA | 11×A | * | |||||
16406414-G- | P6_Dst | * | ||||||
18518297-T-TTTG,TTTG | 16406417-T-TTTG,TTTG | P6_Dst | * | |||||
18556556-C-CTG,CTGTG | 16444676-C-CTG,CTGTG | 15×TG | * | |||||
18647581-CTTTTTTTTTTTTTTTTTTTTTTT-C | 16535701-CTTTTTTTTTTTTTTTTTTTTTTT-C | 56×T | * | |||||
18647640-C-G | 16535760-C-G | Y | Y | * | ||||
18723891-T-C | 16612011-T-C | Y | Y | * | ||||
18801280-A-AT,T | 16689400-A-AT,T | * | ||||||
18817019-CTAAA-C,C | 16705139-CTAAA-C,C | 10×TAAA | * | |||||
18871667-T-G,G | 16759787-T-G,G | * | ||||||
19125694-C-CAAA | 17013814-C-CAAA | 24×A | * | |||||
19226188-AATAGATAGATAGATAGATAG-A,AATAG | 17114308-AATAGATAGATAGATAGATAG-A,AATAG | 14×ATAG | * | |||||
19249679-C-T | 17137799-C-T | Y | * | |||||
19424038-CA-C | 17312158-CA-C | * | ||||||
19437760-G-A | 17325880-G-A | Y | * | |||||
19505912-A-ATG | 17394032-A-ATG | 8×TG | * | |||||
19519594-CA-C,C | 17407714-CA-C,C | 14×A | * | |||||
20101658-A-G | 17989778-A-G | P5_Dst | * | |||||
21078377-A-G | 18916491-A-G | Y | * | |||||
21096078-A-C | 18934192-A-C | Y | * | |||||
21109371-T-C | 18947485-T-C | Y | * | |||||
21112367-G-A | 18950481-G-A | FT77100 | Y | Y | * | |||
21122727-G-A | 18960841-G-A | Y | * | |||||
18978969-T- | * | |||||||
21142834-C-A | 18980948-C-A | Y | Y | 16×A | * | |||
21259930-A-C | 19098044-A-C | Y | Y | * | ||||
21282824-G-GT | 19120938-G-GT | 8×T | * | |||||
21411718-C-CAA,CAAAA | 19249832-C-CAA,CAAAA | 31×A | * | |||||
21464536-C-CA,CAA | 19302650-C-CA,CAA | 19×A | * | |||||
21475688-T-A | 19313802-T-A | Y | * | |||||
21562950-T-G | 19401064-T-G | Y | Y | * | ||||
21788484-CTCT-C | 19626598-CTCT-C | * | ||||||
21851964-C-T | 19690078-C-T | Y | * | |||||
22011557-CAAA-C,CAAAA | 19849671-CAAA-C,CAAAA | 21×A | * | |||||
22048513-A-G | 19886627-A-G | Y | Y | * | ||||
22077088-G-A | 19915202-G-A | Y | Y | * | ||||
22099637-TTATTA-T,TTTA | 19937751-TTATTA-T,TTTA | * | ||||||
22147046-AT-A | 19985160-AT-A | 9×T | * | |||||
22147730-C-CTTTCT,CTTTCT | 19985844-C-CTTTCT,CTTTCT | 19×TTTCT | * | |||||
22173966-A-T | 20012080-A-T | Y | Y | * | ||||
22179363-C-CA,CAA | 20017477-C-CA,CAA | 13×A | * | |||||
22204116-A-T | 20042230-A-T | Y | * | |||||
22228500-AT-A | 20066614-AT-A | DYZ19 | * | |||||
22437163-C-T | 20275277-C-T | DYZ19 | * | |||||
22843740-C-CTTT | 20681854-C-CTTT | 12×T | * | |||||
23006018-C-T | 20844132-C-T | Y | * | |||||
23205605-A-G | 21043719-A-G | Y | * | |||||
23488834-T-TAAAAA | 21326948-T-TAAAAA | 30×A | * | |||||
23545276-T-G,G | 21383390-T-G,G | * | ||||||
24242331-C-CAA,CAAA | 22096184-C-CAA,CAAA | P3_b1 | 16×A | * | ||||
24408989-T-TGGGGGGGGGGG | 22262842-T-TGGGGGGGGGGG | * | ||||||
24446852-A-ATATAT,ATATATATATATAT | 22300705-A-ATATAT,ATATATATATATAT | 15×AT | * | |||||
24456472-TCA-T,TCACACA | 22310325-TCA-T,TCACACA | 14×CA | * | |||||
25994999-T-TTC,TTCTC | 23848852-T-TTC,TTCTC | P1_Y1 | 16×TC | * | ||||
26024566-C-A | 23878419-C-A | P1_Y1 | * | |||||
26352377-A-T | 24206230-A-T | P1_Y1 | * | |||||
27583022-TG-T | 25436875-TG-T | P1_Y2 | * | |||||
27840530-A-T | 25694383-A-T | P1_Y2 | * | |||||
28370015-T-TAG,TATAG | 26223868-T-TAG,TATAG | P1_gr2 | 16×AG | * | ||||
28522973-C-G | 26376826-C-G | * | ||||||
28522988-G-T | 26376841-G-T | * | ||||||
28545016-CAAA-C,CAA | 26398869-CAAA-C,CAA | 22×A | * | |||||
28545038-A-G | 26398891-A-G | * | ||||||
28566054-A-G | 26419907-A-G | * | ||||||
28627647-GCCACC-G | 26481500-GCCACC-G | * | ||||||
28680938-T-TGC | 26534791-T-TGC | 8×C | * | |||||
28700764-TAC-T,T | 26554617-TAC-T,T | 13×AC | * | |||||
28786348-T-TGGAGTGGCAC | 26640201-T-TGGAGTGGCAC | * | ||||||
28787286-G-GTGGAT | 26641139-G-GTGGAT | * | ||||||
28787314-G-C | 26641167-G-C | * | ||||||
28787340-A-G | 26641193-A-G | * | ||||||
28805755-G-T | 26659608-G-T | * | ||||||
28815501-T-A | 26669354-T-A | * | ||||||
56835867-G-GCCACTCCATTCCACTCCACTCCATTCCATTACACTCTACTCCACTCCACTCCACGCCACTCCATTCCACTCCACA | * | |||||||
56859114-C-T | * |
In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.
For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.
The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.
The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.