Rakov

BigY3: INI29393
MDKA Birth: Belarus > Minsk Region 1825

Tree Position

R-M269 > PF7562 > 26595775-C-G

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY3
INI29393
24290888-A-G 22144741-A-G P3_t1 A+
13447274-T-C 11291598-T-C A*
13470654-C-T 11314978-C-T A*
19979864-C-CT 17867984-C-CT P5_Prx 28×TA*
5041260-C-T 5173219-C-T FT114099 A*
13464450-G-A 11308774-G-A A*
21333031-T-TA 19171145-T-TA 11×AA*
13489313-G-A 11333637-G-A BY26219 A*
21558700-A-AT 19396814-A-AT 10×TA*
28606867-C-CT 26460720-C-CT 13×TA*
24884168-C-CT 22738021-C-CT g1 20×TA*
8533407-C-CT 8665366-C-CT 14×TA*
10676675-C-G A*
10692352-T-C A*
10692355-C-T A*
10692357-A-C A*
10692361-A-C A*
15684674-G-GA 13572794-G-GA 11×AA*
4505414-A-AT 4637373-A-AT 22×TA*
5598406-C-CT 5730365-C-CT 10×TA*
13463165-C-T 11307489-C-T A*
5495434-G-GT 5627393-G-GT 9×TA*
5041234-A-G 5173193-A-G FT322521 A*
18316580-G-T 16204700-G-T P6_Prx A*
18317845-C-T 16205965-C-T P6_Prx A*
6180695-G-C 6312654-G-C IR3_Dst A*
13687256-T-C 11531580-T-C A*
20674653-A-G 18512767-A-G P4_Prx A*
24259442-G-T 22113295-G-T P3_b1 A*
25981882-C-T 23835735-C-T P1_Y1 A*
4895152-T-A 5027111-T-A Z3000/S951 7095635-T-AZ2999 +
20931891-A-G 18770005-A-G FGC7685 P4_Dst *
19382304-GATT-G 17270424-GATT-G 7×ATT+
9648729-C-T 9811120-C-T Z22683 IR3_Prx +
4880873-C-T 5012832-C-T FT247890 +
7750676-A-C 7882635-A-C B419 YY+
16232575-C-T 14120695-C-T BY16688 Y32847 YY+
3960352-ATGTG-A 4092311-ATGTG-A 16×TG+
5209361-C-T 5341320-C-T +
9947575-C-A 10109966-C-A FT373373 Y+
13402646-C-T 11246970-C-T +
13881372-C-T 11760666-C-T FT53423 Y+
16353644-A-G 14241764-A-G FT93246 Y+
9061619-C-T 9224010-C-T Y+
14510432-C-T 12398637-C-T Y+
2992470-T-A 3124429-T-A +
3085024-C-G 3216983-C-G +
3189817-T-C 3321776-T-C +
3272545-A-G 3404504-A-G +
3905685-A-G 4037644-A-G +
4391896-A-G 4523855-A-G +
4610145-A-T 4742104-A-T +
4837721-C-G 4969680-C-G +
4920790-A-G 5052749-A-G +
5125130-G-A 5257089-G-A +
5584847-G-T 5716806-G-T +
6818579-G-A 6950538-G-A YY+
7050695-T-C 7182654-T-C YY+
7455608-AC-A 7587567-AC-A IR1_L +
7690495-G-T 7822454-G-T YY+
8060745-GATTGATAT-G 8192704-GATTGATAT-G +
8127494-C-G 8259453-C-G YY+
8718119-G-T 8850078-G-T YY+
9115445-G-A 9277836-G-A Y+
9832356-C-G 9994747-C-G YY+
9952366-G-T 10114757-G-T Y+
10992719-C-T +
13497954-C-T 11342278-C-T +
13558535-A-G 11402859-A-G +
11668224-G-A +
13820862-T-G 11700156-T-G +
14196840-T-G 12076134-T-G YY+
14769665-G-A 12657734-G-A YY+
14864755-G-A 12752821-G-A YY+
14971033-A-T 12859108-A-T YY+
15240654-TC-T 13128740-TC-T +
16092544-G-A 13980664-G-A Y+
16324214-G-A 14212334-G-A YY+
16334610-A-G 14222730-A-G YY+
17050797-A-G 14938917-A-G YY+
17335995-AAAATTATTC-A 15224115-AAAATTATTC-A +
17428521-T-G 15316641-T-G Y+
17688197-C-A 15576317-C-A YY+
17845022-T-C 15733142-T-C YY+
18413585-T-C 16301705-T-C P6_Gap +
18732815-T-C 16620935-T-C YY+
18735978-C-T 16624098-C-T Y+
18838585-G-T 16726705-G-T YY+
18958393-C-T 16846513-C-T YY+
18986498-G-C 16874618-G-C YY+
19096941-G-A 16985061-G-A YY+
19171976-T-C 17060096-T-C Y+
21285118-G-A 19123232-G-A YY+
21455666-GG-T 19293780-GG-T +
21688258-C-T 19526372-C-T YY+
21841310-C-A 19679424-C-A Y+
22803922-A-G 20642036-A-G YY+
22825062-T-C 20663176-T-C YY+
23634566-G-A 21472680-G-A YY+
24466693-A-G 22320546-A-G Y+
24587830-T-C 22441683-T-C P3_t2 +
28737802-C-T 26591655-C-T +
26120150-T-TTTCCTTCC 23974003-T-TTTCCTTCC P1_Y1 12×TTCC*
14102275-G-GTCTATCTA 11981569-G-GTCTATCTA 11×TCTA*
21361264-TATCC-T 19199378-TATCC-T 11×ATCC*
4114451-C-CAGAG 4246410-C-CAGAG 19×AG*
16236233-A-AAAAC 14124353-A-AAAAC 8×AAAC*
5041678-T-C 5173637-T-C FT322525 *
4123943-A-AAAGG 4255902-A-AAAGG 8×AAGG*
13706033-A-AGAATG 11550357-A-AGAATG 10×GAATG*
26099827-GTCTCTC-G,GTC 23953680-GTCTCTC-G,GTC P1_Y1 27×TC*
10960841-C-CTCCAT S7814 *
13865779-CGAATGGAATG-C 11745073-CGAATGGAATG-C 10×GAATG*
13489215-C-G 11333539-C-G *
13489224-G-A 11333548-G-A *
5041629-A-G 5173588-A-G FT322524 *
56827749-TAGTCCATTCCATTCC-T,TAGTCCATTCCATTCG *
20489592-AT-A 18327706-AT-A P5_Dst *
4440963-G-GAATCAGCTTCTA 4572922-G-GAATCAGCTTCTA *
16994106-C-CT 14882226-C-CT 8×T*
17694612-A-C 15582732-A-C YY*
19794230-T-G 17682350-T-G P5_Prx *
56875839-A-T *
13455894-A-C 11300218-A-C **
20510961-AT-A 18349075-AT-A P5_Dst 32×T**
13459288-T-C 11303612-T-C **
18743552-TTCTATCTA-T 16631672-TTCTATCTA-T 12×TCTA**
17196807-GAGAA-G 15084927-GAGAA-G 5×AGAA**
6150009-GTATATA-G 6281968-GTATATA-G IR3_Dst 19×TA**
5659683-ATG-A 5791642-ATG-A 10×TG**
9508531-CTT-C 9670922-CTT-C 25×T**
16818973-A-G 14707093-A-G ZS5822 Z34140 **
24290801-T-A 22144654-T-A P3_t1 **
28438229-C-A 26292082-C-A P1_gr2 **
13460432-G-C 11304756-G-C **
13476625-C-G 11320949-C-G **
13476639-C-CG 11320963-C-CG **
13476635-TC-T 11320959-TC-T **
13476670-G-A 11320994-G-A **
13459133-T-C 11303457-T-C **
6404556-C-G 6536515-C-G **
6404559-G-A 6536518-G-A FTB79213 **
13459142-A-G 11303466-A-G **
6404562-G-A 6536521-G-A FT326446 **
6404538-A-C 6536497-A-C **
6404540-A-T 6536499-A-T **
6404553-A-G 6536512-A-G **
6404574-A-C 6536533-A-C **
6404575-G-T 6536534-G-T **
6404586-A-G 6536545-A-G **
8061762-G-C 8193721-G-C **
9354026-T-C 9516417-T-C **
9832618-A-G 9995009-A-G **
13460483-T-G 11304807-T-G **
20143581-T-G 18031701-T-G P5_Dst **
22316014-T-C 20154128-T-C DYZ19 **
22443769-G-C 20281883-G-C DYZ19 **
22465685-A-T 20303799-A-T DYZ19 **
22465686-T-A 20303800-T-A DYZ19 **
22473412-G-A 20311526-G-A DYZ19 **
22480054-T-A 20318168-T-A DYZ19 **
28805151-GTGGAA-G 26659004-GTGGAA-G 4×TGGAA**
18354236-GGAAAGAAA-G 16242356-GGAAAGAAA-G P6_Prx 13×GAAA***
58974727-A-T 56828580-A-T ***
13454223-T-TTTCCA 11298547-T-TTTCCA 12×TTCCA***
20842493-AAAGG-A 18680607-AAAGG-A P4_Dst 6×AAGG***
21091054-CAA-C 18929168-CAA-C 16×A***
13813581-CGAATG-C 11692875-CGAATG-C 9×GAATG***
6149871-T-TAC 6281830-T-TAC IR3_Dst 17×AC***
28545016-CA-C 26398869-CA-C 22×A***
17114685-TACAC-T 15002805-TACAC-T 19×AC***
19240766-ATT-A 17128886-ATT-A 15×T***
13535639-GTATA-G 11379963-GTATA-G 21×TA***
21086136-T-TA 18924250-T-TA 24×A***
25592861-A-ACT 23446714-A-ACT P1_gr1 20×CT***
5534982-C-CT 5666941-C-CT 10×T***
13954127-A-AAATAATAATAAT 11833421-A-AAATAATAATAAT 12×AAT***
22896225-G-GA 20734339-G-GA 11×A***
23825064-ATT-A 21663178-ATT-A 25×T***
5204641-C-CA 5336600-C-CA 22×A***
13489239-C-G 11333563-C-G ***
19073838-G-GTA 16961958-G-GTA 16×TA***
13489629-CCACCCA-C,CCAACC 11333953-CCACCCA-C,CCAACC ***
18916849-CTT-C 16804969-CTT-C 14×T***
5147441-C-CA 5279400-C-CA 30×A***
56828595-T-G ***
56828579-G-T ***
56828590-A-T ***
10668622-G-GTTCCA ***
4174952-G-T 4306911-G-T ***
56828575-A-G ***
5931916-CTT-C 6063875-CTT-C 32×T***
13453189-C-T 11297513-C-T ***
9789275-CGTGTGT-C,CGT 9951666-CGTGTGT-C,CGT 22×GT***
13451745-ACTCCATTCCACTCCG-A,AATCCATTCCATTCCG 11296069-ACTCCATTCCACTCCG-A,AATCCATTCCATTCCG ***
10754934-CTCCATTCCAT-C ***
13489212-G-A 11333536-G-A ***
10935579-CTCCAT-C ***
24383530-CA-C,CAA 22237383-CA-C,CAA 15×A***
4997519-C-CAGAGAG 5129478-C-CAGAGAG 16×AG***
16652003-TG-T 14540123-TG-T ***
10661191-CCATTCCACTG-C,CCG ***
21753234-A-G ***
21753348-C-T ***
21753373-A-G ***
21753379-C-A ***
14695501-C-CA 12583567-C-CA 10×A***
13884529-CAAA-C 11763823-CAAA-C 17×A***
28686423-CAAAA-C 26540276-CAAAA-C 21×A***
13470658-C-A 11314982-C-A ***
9120876-ATTT-A ***
19079234-CT-C,CTT 16967354-CT-C,CTT 19×T***
10810986-CTTAA-C,CGTTAA ***
14565138-A-G 12453338-A-G ***
4067394-AAG-A 4199353-AAG-A ***
56828610-A-T ***
10660741-TTTCCATTCCA-T ***
56843394-C-T ***
8830435-TA-T 8962394-TA-T 10×A***
13453168-C-A 11297492-C-A ***
17694611-A-AC 15582731-A-AC ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.