Tree Position

A0-T-YP2191 > P305[A1] > A1b > BT/A1b2 > M168/PF1416[CT] > P143[CF] > M89/PF2746[F] > F1329/M3658[GHI > F929[HIJK] > IJK > K > M526[K2] > M2335 > F346[NO] > M2148[N] > Exact position not yet finalized.

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STR1kG
NA18747
13805514-G-A 11684808-G-A +
14581674-C-T 12469874-C-T FGC11833Y3096 FGC11833 YY+
3224406-G-A 3356365-G-A FT316497 +
2760624-A-G 2892583-A-G CTS142 YY+
2820930-A-G 2952889-A-G F14946 YY+
3029856-C-A 3161815-C-A FT315808 +
3062070-T-C 3194029-T-C FT315917 +
3204213-G-A 3336172-G-A FT316421 +
3781276-T-C 3913235-T-C FT318471 +
4008598-A-C 4140557-A-C FT319228 +
4163265-T-A 4295224-T-A +
4399520-C-A 4531479-C-A +
4502104-A-T 4634063-A-T FT320841 +
4503041-C-T 4635000-C-T BY33463 Y60612 +
4655781-C-G 4787740-C-G FT321321 +
4841534-C-T 4973493-C-T +
5128779-T-A 5260738-T-A FT322834 +
5389944-T-C 5521903-T-C FT323737 +
5473026-T-G 5604985-T-G FT324026 +
5482677-C-T 5614636-C-T FT7927 +
5854779-G-T 5986738-G-T FT325285 +
6353913-C-G 6485872-C-G FT326294 +
6360790-G-A 6492749-G-A FT326317 +
6414169-G-A 6546128-G-A FT159362 +
6669300-A-G 6801259-A-G F15236 YY+
6785744-T-A 6917703-T-A F15331 YY+
6794442-C-A 6926401-C-A F15336 YY+
6797580-C-T 6929539-C-T YY+
6841028-G-T 6972987-G-T CTS557 YY+
6845737-G-A 6977696-G-A F15379 YY+
6953807-C-G 7085766-C-G F15491 YY+
7130812-A-C 7262771-A-C F15619 YY+
7322157-AC-A 7454116-AC-A +
7364285-G-T 7496244-G-T YY+
7520886-C-T 7652845-C-T YY+
7762736-G-T 7894695-G-T F16225 YY+
7768113-A-G 7900072-A-G FT300244 YY+
7809749-T-G 7941708-T-G F16274 YY+
7950182-C-T 8082141-C-T BY17901 YY+
8163309-T-C 8295268-T-C F16705 YY+
8215761-G-C 8347720-G-C F16772 YY+
8305643-T-A 8437602-T-A F16890 YY+
8508544-G-A 8640503-G-A F17160 YY+
8770624-C-T 8902583-C-T F17469 YY+
8790588-G-A 8922547-G-A YY+
8854006-C-A 8985965-C-A YY+
9439401-C-T 9601792-C-T F17872 YY+
9460444-G-C 9622835-G-C F17900 YY+
9466056-C-T 9628447-C-T +
9519010-A-G 9681401-A-G FT328103 +
9831014-A-G 9993405-A-G F17949 YY+
9844043-A-G 10006434-A-G F17969 YY+
9906902-G-A 10069293-G-A Y+
9927586-C-G 10089977-C-G Y+
9996090-A-T 10158481-A-T Y+
13246465-A-G 11090789-A-G +
13345619-T-A 11189943-T-A +
13415070-C-T 11259394-C-T +
13481395-G-A 11325719-G-A +
13539962-A-G 11384286-A-G +
13580661-C-T 11424985-C-T +
13589529-G-A 11433853-G-A +
13630659-G-A 11474983-G-A +
13653421-G-T 11497745-G-T +
13665536-T-G 11509860-T-G +
13689544-T-C 11533868-T-C +
13825894-T-C 11705188-T-C +
13838284-A-T 11717578-A-T FT328635 +
13860994-G-A 11740288-G-A FT328829 +
13915858-A-G 11795152-A-G FT300704 Y+
13965196-G-C 11844490-G-C FT300735 Y+
13968007-G-A 11847301-G-A FT300739 Y+
13969957-G-A 11849251-G-A FT300741 Y+
14005208-G-A 11884502-G-A F18325 YY+
14126691-G-A 12005985-G-A CTS1935 YY+
14188068-G-A 12067362-G-A F18599 YY+
14310514-C-T 12189808-C-T CTS2451 YY+
14363078-T-C 12242373-T-C F18866 YY+
14614705-G-T 12502903-G-T Y+
14675580-G-A 12563646-G-A Y+
14696207-C-A 12584273-C-A CTS3170 YY+
15054627-C-A 12942718-C-A YY+
15072807-A-G 12960897-A-G CTS3618 YY+
15078691-C-T 12966781-C-T CTS3623 YY+
15209229-A-C 13097315-A-C YY+
15531243-C-T 13419363-C-T F19890 YY+
15714920-C-A 13603040-C-A F20048 YY+
15814185-G-A 13702305-G-A YY+
15853514-G-T 13741634-G-T Y+
15949843-T-G 13837963-T-G FT301290 YY+
16299593-T-G 14187713-T-G F20540 YY+
16353936-G-A 14242056-G-A Y+
16457568-C-T 14345688-C-T F20706 YY+
16546001-T-C 14434121-T-C F20807 YY+
16721640-A-G 14609760-A-G FT301467 Y+
16830669-C-T 14718789-C-T FT301489 YY+
17342637-G-A 15230757-G-A CTS7197 YY+
17372424-G-A 15260544-G-A FT301616 Y+
17427016-C-T 15315136-C-T F21762 YY+
17447812-C-A 15335932-C-A CTS7375 YY+
17496674-C-T 15384794-C-T FT301650 YY+
17591043-G-C 15479163-G-C F21921 YY+
17655251-C-T 15543371-C-T F21982 YY+
17835588-C-T 15723708-C-T Y+
17848929-G-T 15737049-G-T YY+
18065828-G-C 15953948-G-C CTS8524 YY+
18386488-C-A 16274608-C-A P6_Gap +
18618758-G-A 16506878-G-A YY+
18810589-T-G 16698709-T-G F22928 YY+
18879736-T-C 16767856-T-C FT301999 Y+
18976896-C-A 16865016-C-A YY+
19332906-C-G 17221026-C-G CTS10226 YY+
19400819-G-A 17288939-G-A F23639 YY+
19437376-G-A 17325496-G-A Y+
20804583-A-G 18642697-A-G P4_Gap +
21226399-G-A 19064513-G-A FT286822 YY+
21345784-T-C 19183898-T-C F24192 YY+
21366157-G-A 19204271-G-A FT302329 YY+
21366950-G-A 19205064-G-A F24222 YY+
21474889-T-A 19313003-T-A Y+
21474890-C-A 19313004-C-A Y+
21580010-G-A 19418124-G-A Y+
21605930-C-G 19444044-C-G F24492 YY+
21609503-A-T 19447617-A-T F24499 YY+
21801167-C-T 19639281-C-T F24709 YY+
21889026-C-A 19727140-C-A FT302514 YY+
22155832-G-A 19993946-G-A FGC64994 YY+
22162252-A-G 20000366-A-G YY+
22288828-G-T 20126942-G-T DYZ19 +
22423687-G-C 20261801-G-C DYZ19 +
22460886-T-G 20299000-T-G DYZ19 +
22483099-T-C 20321213-T-C DYZ19 +
22592219-T-C 20430333-T-C YY+
22610610-A-G 20448724-A-G F25303 YY+
22634426-G-A 20472540-G-A FT213577 Y+
22799397-T-C 20637511-T-C Y+
22811282-A-G 20649396-A-G FT302724 Y+
22823528-C-T 20661642-C-T F25494 YY+
22965096-G-A 20803210-G-A F25643 YY+
23095699-C-T 20933813-C-T Y+
23197025-C-T 21035139-C-T Y+
23244540-T-C 21082654-T-C F25885 YY+
23246681-C-T 21084795-C-T F25889 YY+
23345771-G-A 21183885-G-A FT302871 YY+
23381969-C-T 21220083-C-T FT302882 YY+
23467958-C-G 21306072-C-G YY+
23468515-A-G 21306629-A-G YY+
23605138-G-T 21443252-G-T F26277 YY+
23648600-C-T 21486714-C-T Y+
23801187-G-A 21639301-G-A F26391 Y+
23808774-T-A 21646888-T-A F26400 Y+
28621474-A-G 26475327-A-G Y+

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.