Osgood

BigY2: 200946
MDKA Birth: England

Tree Position

R-P312/S116 > Z40481 > ZZ11 > DF27/S250 > Z195/S355 > Z198 > Z46513 > ZS312 > Z262 > M167 > Z264 > Z205 > ~22224168-A-C > Z206/S235 > BY3222 > Z29719 > CTS4549 > Y129311

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY2
200946
13695001-C-T 11539325-C-T A*
28816627-T-G 26670480-T-G A*
13695048-T-TCTGGA 11539372-T-TCTGGA A*
6285507-C-G 6417466-C-G IR3_Dst A*
22304398-G-C 20142512-G-C DYZ19 A*
22304570-G-T 20142684-G-T DYZ19 A*
22304735-G-A 20142849-G-A DYZ19 A*
18769173-G-A 16657293-G-A Y102634 YY+
6458085-T-A 6590044-T-A BY165935 +
6754641-G-A 6886600-G-A YY+
7420271-TC-T 7552230-TC-T +
8631896-G-A 8763855-G-A BY166487 YY+
14409253-C-T 12288550-C-T YY+
14803273-T-A 12691344-T-A BY166946 YY+
14843994-T-C 12732060-T-C BY166957 YY+
15091545-A-G 12979634-A-G BY167008 YY+
15704505-G-A 13592625-G-A BY167138 YY+
15810957-TGGGG-T 13699077-TGGGG-T +
16741876-T-A 14629996-T-A BY167369 YY+
16741891-C-T 14630011-C-T BY167370 YY+
18163630-A-G 16051750-A-G BY167818 YY+
18887433-G-A 16775553-G-A BY167970 YY+
18901437-C-A 16789557-C-A BY167973 YY+
21156709-C-G 18994823-C-G BY168207 Y+
21340877-C-T 19178991-C-T BY168272 YY+
21462192-C-A 19300306-C-A BY168318 YY+
21462193-A-T 19300307-A-T BY168319 YY+
22440198-G-C 20278312-G-C BY218767 DYZ19 +
22474989-G-T 20313103-G-T BY223254 DYZ19 +
23540560-CA-C 21378674-CA-C +
23785679-G-A 21623793-G-A BY168816 Y+
21079214-A-AAC 18917328-A-AAC 8×AC*
22234085-A-T 20072199-A-T DYZ19 *
22317409-G-T 20155523-G-T BY5923 DYZ19 *
14031696-C-CTCTTTCTTTCTT 11910990-C-CTCTTTCTTTCTT 13×TCTT**
13463848-G-C 11308172-G-C **
6919388-C-T 7051347-C-T PF2843 CTS635 Z6131 M3449 **
13460792-G-T 11305116-G-T **
13460819-C-T 11305143-C-T **
17463348-T-A 15351468-T-A FTB33688 **
19271215-G-C 17159335-G-C BY352 **
23552740-A-C 21390854-A-C BY164644Z12208 F13771 **
22147816-TTTCTTTTCTC-T 19985930-TTTCTTTTCTC-T **
16271807-GAAAAA-G 14159927-GAAAAA-G 19×A**
10787350-A-C **
10808645-C-T **
10924703-C-A **
10952449-C-T **
10952474-C-G **
10688227-T-C **
14007332-C-A 11886626-C-A **
10924319-C-T **
10669381-T-C **
10669408-C-T **
13468187-C-T 11312511-C-T **
10992995-A-T **
10688229-C-G **
10880339-C-A **
10967530-T-C **
14418989-C-A 12298264-C-A **
9181016-C-A 9343407-C-A **
13718524-C-A 11562848-C-A **
15179010-CAAAAA-C 13067096-CAAAAA-C 25×A**
10949575-C-T **
2892688-C-A 3024647-C-A **
15264818-C-A 13152907-C-A **
14070220-TA-T 11949514-TA-T 9×A**
18195154-A-T 16083274-A-T Y54383 29×T**
10813631-T-G **
22914666-G-T 20752780-G-T **
16964062-C-A 14852182-C-A **
7645601-C-A 7777560-C-A **
10688259-C-G **
10688262-T-C **
26272568-C-A 24126421-C-A P1_Y1 **
16819638-CA-C 14707758-CA-C 9×A**
10764572-T-TGA **
11037167-C-A **
10967516-T-C **
17632570-G-GTTT 15520690-G-GTTT 22×T**
13728447-C-A 11572771-C-A **
10967525-T-C **
10992980-A-AT **
10992985-A-C **
10669393-C-G **
16666115-C-A 14554235-C-A **
17278090-C-A 15166210-C-A **
4208383-C-A 4340342-C-A **
10787365-A-C **
10787363-G-T **
13463866-G-A 11308190-G-A **
13463871-G-T 11308195-G-T **
15658215-G-GTA 13546335-G-GTA **
13463100-G-T 11307424-G-T **
10949587-C-T **
10671700-C-A **
10789534-C-A **
5367840-G-T 5499799-G-T **
11037138-C-T **
20247748-A-AG 18085862-A-AG P5_Dst **
19271207-G-C 17159327-G-C **
19271210-A-T 17159330-A-T **
19271229-C-G 17159349-C-G **
10688224-C-A **
10688225-C-T **
10848059-T-C **
19567143-A-C 17455263-A-C **
13463899-T-C 11308223-T-C **
5190064-C-A 5322023-C-A **
11037132-T-G **
13460990-C-G 11305314-C-G **
10999860-A-C **
16412259-C-A 14300379-C-A **
10971338-G-T **
10999869-C-CGT **
3821045-C-A 3953004-C-A **
26421469-G-T 24275322-G-T P1_Y1 **
13463144-C-A 11307468-C-A **
21185168-C-A 19023282-C-A **
13463131-T-A 11307455-T-A **
13463136-C-G 11307460-C-G **
21043029-C-A 18881143-C-A **
17302237-C-A 15190357-C-A **
27264837-T-TA 25118690-T-TA P1_g3 12×A**
11037117-C-A **
2762126-A-G 2894085-A-G **
8669965-C-A 8801924-C-A **
21691491-T-TA 19529605-T-TA 9×A**
14763605-A-T 12651674-A-T **
11031308-T-C **
13463091-G-A 11307415-G-A **
13463917-G-GC 11308241-G-GC **
23417260-C-A 21255374-C-A **
14879892-C-A 12767962-C-A **
10006137-T-C 10168528-T-C **
15252717-C-A 13140803-C-A **
28768821-C-A 26622674-C-A **
2665752-C-A 2797711-C-A **
7387781-AT-A 7519740-AT-A 8×T**
23591039-G-T 21429153-G-T **
17678147-GTA-G 15566267-GTA-G **
23128044-C-A 20966158-C-A **
18270539-G-A 16158659-G-A **
23427021-C-A 21265135-C-A **
10971363-G-T **
10783724-G-A **
11004437-T-G **
5785825-C-A 5917784-C-A **
14844458-A-G 12732524-A-G **
10967510-T-C **
18793400-C-A 16681520-C-A **
14763618-G-C 12651687-G-C **
19567145-A-T 17455265-A-T **
10799709-C-A **
2707034-T-A 2838993-T-A **
2746064-C-G 2878023-C-G **
2868988-TC-T 3000947-TC-T **
3789839-T-A 3921798-T-A **
4516049-T-C 4648008-T-C **
4604549-G-A 4736508-G-A **
6619761-T-G 6751720-T-G **
6714204-G-T 6846163-G-T **
6759260-C-A 6891219-C-A **
6792480-T-A 6924439-T-A **
6856606-TG-T 6988565-TG-T **
6925198-T-A 7057157-T-A **
6944031-T-G 7075990-T-G **
7014354-C-A 7146313-C-A **
7216519-C-A 7348478-C-A **
7622821-A-C 7754780-A-C **
7625144-C-A 7757103-C-A **
7670354-A-C 7802313-A-C **
9124403-T-C **
9512547-GT-G 9674938-GT-G **
10013849-T-A 10176240-T-A **
10662318-TTGCA-T **
10671617-C-G **
10688177-T-C **
10749127-C-A **
10787329-C-CCAGGA **
10789664-C-A **
10824963-T-G **
10880959-A-T **
10880972-C-T **
10924318-T-C **
10942991-C-A **
10952590-C-A **
10953287-C-A **
10967489-A-T **
10999871-T-TGAC **
11004447-T-G **
11005513-C-A **
11037179-A-G **
11037198-C-T **
13296184-G-T 11140508-G-T 14×T**
13938994-C-A 11818288-C-A **
13963888-C-A 11843182-C-A **
14059978-C-A 11939272-C-A **
14101355-C-A 11980649-C-A **
14138155-C-A 12017449-C-A **
14152167-C-A 12031461-C-A **
14168576-C-A 12047870-C-A **
14362654-C-A 12241949-C-A **
14392760-A-T 12272056-A-T **
14518879-G-A 12407080-G-A **
14540150-C-A 12428351-C-A **
14612668-C-A 12500866-C-A **
14763606-C-G 12651675-C-G **
14765244-T-C 12653313-T-C **
14933815-C-T 12821880-C-T **
14995330-C-A 12883415-C-A **
15150901-A-G 13038988-A-G **
15209450-C-A 13097536-C-A **
15252764-G-A 13140850-G-A **
15315457-G-T 13203562-G-T **
15360699-C-A 13248819-C-A **
15392211-G-A 13280331-G-A **
15767028-T-G 13655148-T-G **
15791636-T-C 13679756-T-C **
15864312-C-T 13752432-C-T **
15988159-C-A 13876279-C-A **
16211191-C-A 14099311-C-A **
16547101-A-G 14435221-A-G **
16620544-G-A 14508664-G-A **
16704296-CT-C 14592416-CT-C **
16865373-T-G 14753493-T-G **
17003322-T-A 14891442-T-A **
17330264-A-C 15218384-A-C **
17387515-C-T 15275635-C-T **
17463351-A-T 15351471-A-T **
17470718-G-A 15358838-G-A **
17545628-T-C 15433748-T-C **
17545649-G-A 15433769-G-A **
17643994-A-G 15532114-A-G **
17854219-C-A 15742339-C-A **
18270542-C-T 16158662-C-T **
18455803-GA-G 16343923-GA-G P6_Dst **
18585756-T-C 16473876-T-C **
18872213-T-C 16760333-T-C **
18904446-A-G 16792566-A-G **
19053066-C-A 16941186-C-A **
19079363-A-C 16967483-A-C **
19079383-C-A 16967503-C-A **
19125037-C-A 17013157-C-A **
19146632-C-A 17034752-C-A **
19271228-G-T 17159348-G-T **
19271239-G-C 17159359-G-C **
19271248-G-A 17159368-G-A **
19415918-C-A 17304038-C-A **
19416866-G-A 17304986-G-A **
19567147-G-A 17455267-G-A **
20054370-G-T 17942490-G-T P5_Prx **
20054393-A-T 17942513-A-T P5_Prx **
20054403-C-A 17942523-C-A P5_Prx **
20054407-C-A 17942527-C-A P5_Prx **
21167283-C-T 19005397-C-T 12×T**
21833862-A-G 19671976-A-G **
21853593-T-G 19691707-T-G **
21883682-T-C 19721796-T-C **
21932475-C-A 19770589-C-A **
22190686-C-A 20028800-C-A **
22457491-T-A 20295605-T-A DYZ19 **
22951800-C-A 20789914-C-A **
22978768-A-G 20816882-A-G **
23198265-A-G 21036379-A-G **
23392192-T-C 21230306-T-C **
23591048-C-A 21429162-C-A BY171546 **
23591056-G-A 21429170-G-A **
23648243-A-G 21486357-A-G **
24439677-G-T 22293530-G-T FT353617 **
24912376-A-G 22766229-A-G g1 **
26272587-C-A 24126440-C-A P1_Y1 **
26593011-C-T 24446864-C-T P1_g2 **
27937725-C-A 25791578-C-A P1_Y2 **
28777963-TGTTTATGTTTAAA-T 26631816-TGTTTATGTTTAAA-T **
28787979-A-T 26641832-A-T **
28787993-GAAC-G 26641846-GAAC-G **
56707226-A-C **
56844796-G-T **
13463087-C-A 11307411-C-A ***
22126985-AT-A 19965099-AT-A 9×T***
13472127-G-T 11316451-G-T ***
6401091-C-A 6533050-C-A Z8415 ***
13489621-C-CTA 11333945-C-CTA ***
9398399-CA-C 9560790-CA-C 10×A***
58972949-G-T 56826802-G-T ***
10977038-C-T ***
10958358-C-G ***
17662010-ATGTGTG-A,ATG 15550130-ATGTGTG-A,ATG 21×TG***
13483430-T-A 11327754-T-A ***
10760382-C-T ***
18534157-TATAC-T 16422277-TATAC-T P6_Dst ***
21814791-C-T 19652905-C-T ***
13488799-A-C 11333123-A-C ***
13488803-G-C 11333127-G-C ***
13488828-T-C,G 11333152-T-C,G ***
10689147-C-A ***
11643734-G-A ***
13488927-T-G 11333251-T-G ***
15336707-CAAAA-C 13224825-CAAAA-C 20×A***
10977066-TCCTCTCCACT-T,TCCTCTACACTCCACTGCACC ***
22122305-G-A 19960419-G-A ***
10689127-C-A ***
10689134-A-T ***
10689160-T-C ***
16850070-C-A 14738190-C-A ***
5412277-C-A 5544236-C-A ***
23544846-CTT-C,CTTT 21382960-CTT-C,CTTT 15×T***
3621507-G-T 3753466-G-T ***
3717423-TC-T 3849382-TC-T ***
3817609-T-A 3949568-T-A ***
5824351-C-T 5956310-C-T ***
7281185-T-C 7413144-T-C ***
7347969-C-A 7479928-C-A ***
7568760-G-T 7700719-G-T ***
7781681-G-T 7913640-G-T ***
7982800-C-A 8114759-C-A ***
8346618-C-A 8478577-C-A ***
10673913-C-A,G ***
10677458-ACTG-A,ATCA ***
13488821-C-G,T 11333145-C-G,T ***
11652851-A-T ***
14822318-C-A 12710385-C-A ***
15248837-C-A 13136923-C-A ***
15341686-A-T 13229805-A-T ***
15584464-T-C 13472584-T-C ***
15931479-C-A 13819599-C-A ***
16791080-C-A 14679200-C-A ***
17141843-T-C 15029963-T-C ***
17369196-G-A 15257316-G-A ***
18097731-T-C 15985851-T-C ***
18243187-AAGAAAAACTTTC-A 16131307-AAGAAAAACTTTC-A ***
18613244-C-A 16501364-C-A ***
18778740-T-C 16666860-T-C ***
19235874-C-A 17123994-C-A ***
21177482-C-A 19015596-C-A ***
21266888-G-T 19105002-G-T ***
21624930-T-C 19463044-T-C ***
22190498-C-A 20028612-C-A ***
23441012-C-A 21279126-C-A ***
23468424-C-T 21306538-C-T ***
27823832-A-T 25677685-A-T P1_Y2 ***
28593867-T-C 26447720-T-C ***
28803654-TGGACAGGAATGG-T 26657507-TGGACAGGAATGG-T ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.