Savron

BigY2: 133001
MDKA Birth: Slovenia

Tree Position

R-P312/S116 > Z40481 > ZZ11 > DF27/S250 > ZZ12 > ZZ39 > Z229 > Z2543

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY2
133001
19880475-C-T 17768595-C-T P5_Prx A*
20671708-A-G 18509822-A-G P4_Prx A*
20695225-A-G 18533339-A-G P4_Prx A*
25617438-T-C 23471291-T-C P1_gr1 A*
22299831-G-A 20137945-G-A BY216814 DYZ19 +
2736547-C-T 2868506-C-T BY181014 YY+
7206306-C-T 7338265-C-T BY181121 YY+
7653186-C-T 7785145-C-T BY181166 YY+
7870525-A-C 8002484-A-C BY181196 YY+
13854057-C-T 11733351-C-T BY181440 +
14301495-C-A 12180789-C-A BY181486 YY+
14309946-G-C 12189240-G-C BY181487 YY+
15072780-T-A 12960870-T-A BY181565 YY+
15334223-A-G 13222341-A-G BY181579 Y+
15491337-G-C 13379457-G-C BY181594 YY+
16038774-G-A 13926894-G-A BY181635 YY+
16072695-G-A 13960815-G-A BY181638 Y+
16671504-G-A 14559624-G-A BY181702 YY+
16793317-G-T 14681437-G-T BY181719 YY+
16870263-G-A 14758383-G-A YY+
17807932-G-A 15696052-G-A YY+
18237034-A-C 16125154-A-C BY181894 Y+
18417210-C-A 16305330-C-A BY181906 P6_Gap +
19160029-G-A 17048149-G-A BY181984 YY+
21916255-G-A 19754369-G-A BY182128 YY+
22108979-C-T 19947093-C-T BY182151 YY+
22444399-G-C 20282513-G-C FT456795 DYZ19 +
22466925-C-G 20305039-C-G BY221811 DYZ19 +
22836188-T-C 20674302-T-C BY182243 YY+
23088508-C-T 20926622-C-T YY+
23999857-G-A 21853710-G-A BY182362 Y+
24394901-G-A 22248754-G-A BY182367 Y+
22255302-G-A 20093416-G-A DYZ19 *
22302700-C-T 20140814-C-T DYZ19 *
22432371-G-A 20270485-G-A DYZ19 *
28813248-A-T 26667101-A-T *
14470599-C-A 12349868-C-A **
15364058-T-A 13252178-T-A BY101141 **
19775300-G-T 17663420-G-T P5_Prx **
14802977-G-A 12691048-G-A **
22842146-A-T 20680260-A-T **
10860071-C-A **
9935212-C-A 10097603-C-A FT373329 **
15402879-A-G 13290999-A-G **
19060064-G-A 16948184-G-A FT54479 **
16828749-C-A 14716869-C-A **
15616766-G-A 13504886-G-A **
15786062-C-A 13674182-C-A **
19732413-C-G 17620533-C-G P5_Prx **
13705495-G-A 11549819-G-A **
10992846-T-A **
10690730-C-A **
6264478-T-G 6396437-T-G IR3_Dst **
10924373-A-T **
10798585-C-A **
10785309-A-G **
22287079-G-A 20125193-G-A DYZ19 **
21515768-C-T 19353882-C-T **
17367554-C-A 15255674-C-A **
15612299-C-G 13500419-C-G **
11038241-C-A **
17369380-C-A 15257500-C-A **
14807249-C-T 12695320-C-T **
14807250-T-C 12695321-T-C **
16713001-C-A 14601121-C-A **
28570365-G-GA 26424218-G-GA 8×A**
10844239-A-G **
22730635-C-A 20568749-C-A **
13988786-T-C 11868080-T-C **
23768804-C-A 21606918-C-A **
14382803-G-A 12262099-G-A **
10930607-G-A **
21134992-T-C 18973106-T-C **
21134993-G-A 18973107-G-A **
2860377-C-A 2992336-C-A **
14051932-C-A 11931226-C-A **
56851032-G-T **
10916544-C-A **
10959283-C-T **
6435119-C-A 6567078-C-A **
10924388-A-AATC **
10790235-A-C **
7709401-C-A 7841360-C-A **
7756808-C-A 7888767-C-A **
13593778-C-A 11438102-C-A **
10661459-C-A **
8167823-C-A 8299782-C-A **
16905827-T-C 14793947-T-C FT370063 **
22183017-C-A 20021131-C-A **
15374558-C-A 13262678-C-A **
13859630-G-T 11738924-G-T **
10748184-C-A **
22193052-T-G 20031166-T-G **
13466117-T-A 11310441-T-A **
7157945-C-A 7289904-C-A **
10789348-T-G **
13249577-C-A 11093901-C-A **
16700225-C-A 14588345-C-A **
6339129-AC-A 6471088-AC-A IR3_Dst **
24564548-C-A 22418401-C-A P3_t2 **
15500603-C-A 13388723-C-A **
22730662-C-A 20568776-C-A **
14605854-C-A 12494056-C-A **
28496950-C-A 26350803-C-A **
10976064-C-A **
9926845-C-A 10089236-C-A **
11003414-C-A **
18764508-C-A 16652628-C-A **
6765542-C-A 6897501-C-A **
10748021-C-G **
56827638-T-A **
10925482-T-G **
14297956-A-AT 12177250-A-AT **
56837110-C-A **
23954129-C-A 21807982-C-A **
10761338-C-A **
10663334-C-A **
10925480-A-G **
23452681-C-A 21290795-C-A **
15790514-C-A 13678634-C-A **
16243182-C-A 14131302-C-A **
10794239-C-A **
10929598-T-A **
28510859-C-A 26364712-C-A **
6700719-C-T 6832678-C-T **
10825261-A-T **
13723092-C-G 11567416-C-G **
10778950-C-A **
19075034-C-A 16963154-C-A **
4626757-C-A 4758716-C-A **
10851679-G-A **
22974143-T-TA 20812257-T-TA **
13371714-C-A 11216038-C-A **
28605342-C-A 26459195-C-A **
14284055-C-A 12163349-C-A FT133867 **
7670697-C-A 7802656-C-A **
22843740-C-CTT 20681854-C-CTT 12×T**
13857690-G-T 11736984-G-T **
2688828-G-A 2820787-G-A **
7243322-C-A 7375281-C-A **
14351320-T-C 12230615-T-C **
28701474-C-A 26555327-C-A **
22842166-AG-A 20680280-AG-A **
7228489-G-A 7360448-G-A FT310627 **
26018417-GT-G 23872270-GT-G P1_Y1 **
2701035-G-A 2832994-G-A **
2795047-GCATGAGTTCT-G 2927006-GCATGAGTTCT-G **
3389141-C-A 3521100-C-A **
3467142-G-A 3599101-G-A **
3591609-C-A 3723568-C-A **
3684329-C-A 3816288-C-A **
3723411-G-T 3855370-G-T **
3815218-G-T 3947177-G-T **
3865482-T-C 3997441-T-C **
4034662-A-G 4166621-A-G **
4034744-A-G 4166703-A-G **
4270584-C-A 4402543-C-A **
4375666-C-A 4507625-C-A **
4388469-CAAAA-C 4520428-CAAAA-C 14×A**
4789309-G-T 4921268-G-T **
4874341-C-A 5006300-C-A **
5000478-C-A 5132437-C-A **
5021968-C-T 5153927-C-T FT52412 **
5682700-G-T 5814659-G-T **
5842530-G-A 5974489-G-A **
5980943-C-A 6112902-C-A **
6630586-T-C 6762545-T-C **
6630591-A-G 6762550-A-G **
6791739-T-C 6923698-T-C **
6822513-C-A 6954472-C-A **
6957289-C-A 7089248-C-A **
7088052-T-C 7220011-T-C **
7088057-C-T 7220016-C-T **
7088058-C-T 7220017-C-T **
7088059-A-G 7220018-A-G **
7091224-C-A 7223183-C-A **
7132736-TA-T 7264695-TA-T **
7143262-C-T 7275221-C-T **
7203892-TATATATAATTTTATAA-T 7335851-TATATATAATTTTATAA-T **
7306716-T-C 7438675-T-C **
7370485-G-T 7502444-G-T **
7413967-T-G 7545926-T-G **
7578876-C-A 7710835-C-A **
7733851-G-T 7865810-G-T FT370014 **
7829134-A-C 7961093-A-C **
8002007-T-C 8133966-T-C **
8218002-C-T 8349961-C-T **
8230321-G-A 8362280-G-A **
8293338-C-A 8425297-C-A **
8697387-G-A 8829346-G-A **
9964272-T-G 10126663-T-G **
9964328-T-G 10126719-T-G **
9964344-T-G 10126735-T-G **
10017683-C-A 10180074-C-A FT376292 **
10017685-C-T 10180076-C-T FT376293 **
10748025-CC-A **
10759188-C-T **
10759189-T-C **
10759198-T-C **
10765630-C-A **
10778965-C-CGGGT **
10786631-C-A **
10792630-T-G **
10794209-C-T **
10794218-C-CCAT **
10794221-C-CACTCCAA **
10794254-C-G **
10794277-T-A **
10818769-T-A **
10851678-T-C **
10860066-TG-T **
10865634-C-A **
10866651-T-A **
10866654-T-A **
10885859-C-A **
10929599-T-C **
10930577-ACTCCATTCC-A **
10930589-CT-C **
10940573-T-G **
11026376-C-A **
11033409-C-A **
11038195-C-A **
13462070-G-T 11306394-G-T **
13467889-G-T 11312213-G-T **
13493954-A-G 11338278-A-G **
13612127-C-A 11456451-C-A **
11654691-A-C **
13809158-G-A 11688452-G-A BY90193 **
13874642-T-C 11753936-T-C **
13962312-A-G 11841606-A-G **
13971367-C-A 11850661-C-A **
13988782-T-C 11868076-T-C **
14297972-AT-A 12177266-AT-A **
14351314-T-C 12230609-T-C **
14351324-G-A 12230619-G-A **
14390130-C-A 12269426-C-A **
12308672-GACAAATTTTATATATATATATATATAT-G **
14501131-C-A 12389336-C-A **
14701325-G-A 12589391-G-A **
15320553-G-T 13208659-G-T **
15381375-T-C 13269495-T-C **
15434316-C-A 13322436-C-A **
15616703-GC-G 13504823-GC-G **
15670222-G-A 13558342-G-A **
15680131-T-TTACTGTG 13568251-T-TTACTGTG **
15743713-T-G 13631833-T-G **
15911516-AG-A 13799636-AG-A **
15941107-A-G 13829227-A-G FT370051 **
16090396-C-A 13978516-C-A **
16095850-C-A 13983970-C-A **
16681632-C-A 14569752-C-A **
17078759-C-A 14966879-C-A **
17876453-G-T 15764573-G-T **
17876478-T-G 15764598-T-G **
17885660-C-A 15773780-C-A **
18138279-G-A 16026399-G-A **
18186131-G-T 16074251-G-T **
18232129-CCTGG-C 16120249-CCTGG-C **
18270370-C-T 16158490-C-T **
18270376-G-T 16158496-G-T **
18270399-A-G 16158519-A-G **
18630931-T-C 16519051-T-C **
18695953-C-A 16584073-C-A **
18929988-C-A 16818108-C-A **
19130740-T-TG 17018860-T-TG **
19271201-G-A 17159321-G-A **
19377342-G-A 17265462-G-A **
19578969-A-T 17467089-A-T P5_Prx **
19578986-A-T 17467106-A-T P5_Prx **
19673964-C-A 17562084-C-A P5_Prx **
19673965-T-A 17562085-T-A P5_Prx **
19673978-T-G 17562098-T-G P5_Prx **
19673986-G-T 17562106-G-T P5_Prx **
20028013-T-C 17916133-T-C P5_Prx **
20420812-G-T 18258926-G-T P5_Dst **
21134991-G-A 18973105-G-A **
21323308-C-G 19161422-C-G **
21383281-G-A 19221395-G-A **
21391650-CTTTTT-C 19229764-CTTTTT-C 14×T**
21416545-T-C 19254659-T-C **
21515729-G-C 19353843-G-C **
21558757-G-T 19396871-G-T **
22011807-G-A 19849921-G-A **
22065244-T-G 19903358-T-G **
22165068-G-A 20003182-G-A **
22260182-T-G 20098296-T-G DYZ19 **
22260211-T-G 20098325-T-G DYZ19 **
22260216-T-G 20098330-T-G DYZ19 **
22260234-T-G 20098348-T-G DYZ19 **
22260243-T-G 20098357-T-G DYZ19 **
22260256-T-G 20098370-T-G DYZ19 **
22287148-G-A 20125262-G-A DYZ19 **
22335792-C-A 20173906-C-A DYZ19 **
22499869-T-A 20337983-T-A DYZ19 **
22580230-A-G 20418344-A-G **
22617253-T-C 20455367-T-C **
22650915-A-T 20489029-A-T **
22713066-T-G 20551180-T-G **
22732772-C-A 20570886-C-A **
22842141-T-C 20680255-T-C **
22842161-C-T 20680275-C-T **
22842170-A-G 20680284-A-G **
22842176-A-G 20680290-A-G **
22842178-C-T 20680292-C-T **
22842181-T-C 20680295-T-C **
22842182-G-A 20680296-G-A **
22842190-C-T 20680304-C-T **
22842194-A-G 20680308-A-G **
23007601-T-G 20845715-T-G **
23054464-C-A 20892578-C-A **
23186476-T-C 21024590-T-C **
23819154-C-A 21657268-C-A **
24247528-G-T 22101381-G-T P3_b1 **
24466438-G-A 22320291-G-A FT370108 **
24929828-T-C 22783681-T-C g1 **
26018401-GTTT-G 23872254-GTTT-G P1_Y1 **
26018408-T-TACA 23872261-T-TACA P1_Y1 **
26422465-C-A 24276318-C-A P1_Y1 **
27127680-T-G 24981533-T-G P1_g3 **
27569346-C-A 25423199-C-A P1_Y2 **
27996108-A-T 25849961-A-T P1_Y2 **
28589174-T-C 26443027-T-C **
28610650-C-A 26464503-C-A **
28734929-C-A 26588782-C-A FT229890 **
28771480-A-C 26625333-A-C **
56827651-C-T **
56827710-T-G **
56832776-T-A **
56832933-C-CCTCTG **
9010-C-A **
30645-A-C **
58973010-A-G 56826863-A-G ***
10673887-C-T BY83668 ***
10673837-C-G ***
56833308-TGCCAT-C,GTCCAC ***
56826084-C-A,CTA ***
56832056-TCCACTCCACC-T,TCCACTCCACT ***
13976083-C-CAA 11855377-C-CAA 15×A***
18949947-C-A 16838067-C-A ***
6757883-G-T 6889842-G-T ***
14276423-T-TAA 12155717-T-TAA 13×A***
10673924-A-C ***
17313792-C-A 15201912-C-A ***
7282732-C-A 7414691-C-A ***
7622478-C-A 7754437-C-A ***
8238468-C-A 8370427-C-A ***
10673888-C-CTTT ***
10673889-A-ATG ***
10849265-C-A ***
13491002-G-T 11335326-G-T FGC58507 ***
14025906-G-A 11905200-G-A ***
15209530-ATTT-A,ATT 13097616-ATTT-A,ATT 16×T***
15506884-C-A 13395004-C-A ***
16681754-C-A 14569874-C-A ***
17907814-C-A 15795934-C-A ***
18923342-G-GT,GTT 16811462-G-GT,GTT 18×T***
19259784-C-A 17147904-C-A ***
20829819-C-A 18667933-C-A P4_Gap ***
22023684-GTTTT-G,GTTTTTT 19861798-GTTTT-G,GTTTTTT 17×T***
22165005-A-G 20003119-A-G ***
23802430-CT-C,CTTTT 21640544-CT-C,CTTTT 13×T***
24070721-G-A 21924574-G-A P3_b1 ***
28800512-A-G 26654365-A-G ***
56827471-C-A ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.