Simpkins
BigY2: N76376MDKA Birth: England
Tree Position
Unique Mutations
The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.
Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.
POS-REF-ALT (hg19) | POS-REF-ALT (hg38) | Blocks | Names | Region | McDonald BED | combBED | STR | BigY2 N76376 |
---|---|---|---|---|---|---|---|---|
7954649-C-T | 8086608-C-T | Y | Y | + | ||||
9647521-C-T | 9809912-C-T | IR3_Prx | + | |||||
13862136-G-T | 11741430-G-T | + | ||||||
15040835-T-C | 12928925-T-C | Y | Y | + | ||||
17150010-T-C | 15038130-T-C | Y | Y | + | ||||
19759037-A-G | 17647157-A-G | P5_Prx | + | |||||
19227-A-T | + | |||||||
24242319-G-A | 22096172-G-A | P3_b1 | * | |||||
28810764-C-G | 26664617-C-G | * | ||||||
7201642-A-T | 7333601-A-T | S9954 | ** | |||||
7201646-C-T | 7333605-C-T | ** | ||||||
8901038-G-A | 9032997-G-A | ** | ||||||
20645876-A-T | 18483990-A-T | P4_Prx | ** | |||||
13707382-G-A | 11551706-G-A | ** | ||||||
26120273-CTTCCTTCT-C | 23974126-CTTCCTTCT-C | P1_Y1 | ** | |||||
16896557-G-A | 14784677-G-A | ** | ||||||
24013790-G-T | 21867643-G-T | ** | ||||||
16574947-A-G | 14463067-A-G | ** | ||||||
19720706-G-T | 17608826-G-T | P5_Prx | ** | |||||
21182397-CTTTTTTT-C | 19020511-CTTTTTTT-C | 20×T | ** | |||||
26204685-G-T | 24058538-G-T | P1_Y1 | ** | |||||
23952841-C-A | 21806694-C-A | ** | ||||||
56850434-A-C | ** | |||||||
23262585-T-C | 21100699-T-C | ** | ||||||
23262591-T-C | 21100705-T-C | ** | ||||||
26043573-T-TC | 23897426-T-TC | P1_Y1 | ** | |||||
8379428-C-A | 8511387-C-A | ** | ||||||
15034942-C-A | 12923030-C-A | ** | ||||||
19817559-A-T | 17705679-A-T | P5_Prx | ** | |||||
17503996-G-T | 15392116-G-T | ** | ||||||
7154599-C-A | 7286558-C-A | ** | ||||||
10760032-T-C | ** | |||||||
28499387-C-A | 26353240-C-A | ** | ||||||
21170316-G-T | 19008430-G-T | ** | ||||||
10757983-T-C | ** | |||||||
10672015-C-A | ** | |||||||
14089725-C-A | 11969019-C-A | ** | ||||||
10866039-C-T | ** | |||||||
10912520-C-A | ** | |||||||
16241604-C-A | 14129724-C-A | ** | ||||||
15364051-C-A | 13252171-C-A | ** | ||||||
24671068-G-T | 22524921-G-T | P3_b2 | ** | |||||
7990205-C-A | 8122164-C-A | ** | ||||||
10949976-A-T | ** | |||||||
10057369-C-A | 10219760-C-A | ** | ||||||
21488730-C-A | 19326844-C-A | ** | ||||||
10949977-C-T | ** | |||||||
2790303-C-CTTT | 2922262-C-CTTT | 15×T | ** | |||||
10881967-CTCTGG-C | ** | |||||||
10757987-C-G | ** | |||||||
10758007-C-T | ** | |||||||
21087108-C-A | 18925222-C-A | ** | ||||||
6293383-G-T | 6425342-G-T | IR3_Dst | ** | |||||
8281795-T-A | 8413754-T-A | ** | ||||||
10756238-A-T | ** | |||||||
15792814-C-A | 13680934-C-A | ** | ||||||
17597972-C-A | 15486092-C-A | ** | ||||||
28542999-C-A | 26396852-C-A | ** | ||||||
14986462-G-A | 12874530-G-A | ** | ||||||
22253132-C-A | 20091246-C-A | DYZ19 | ** | |||||
15468601-C-A | 13356721-C-A | ** | ||||||
8216433-C-T | 8348392-C-T | ** | ||||||
10679205-C-A | ** | |||||||
16952563-C-A | 14840683-C-A | ** | ||||||
22103586-C-A | 19941700-C-A | ** | ||||||
7649175-CTT-C | 7781134-CTT-C | 10×T | ** | |||||
14785524-T-A | 12673594-T-A | ** | ||||||
10845245-C-A | ** | |||||||
27699823-C-T | 25553676-C-T | P1_Y2 | ** | |||||
6816755-A-T | 6948714-A-T | S9487 | ** | |||||
10691063-C-T | ** | |||||||
14931856-C-A | 12819921-C-A | ** | ||||||
10014963-C-A | 10177354-C-A | ** | ||||||
3544305-T-G | 3676264-T-G | ** | ||||||
18857061-T-G | 16745181-T-G | ** | ||||||
10873503-C-A | ** | |||||||
6063501-C-A | 6195460-C-A | ** | ||||||
10691059-A-T | ** | |||||||
7208188-C-A | 7340147-C-A | ** | ||||||
11029730-T-A | ** | |||||||
11029734-A-G | ** | |||||||
23185236-C-A | 21023350-C-A | FGC5411 | ** | |||||
13303444-C-A | 11147768-C-A | ** | ||||||
16445826-C-A | 14333946-C-A | ** | ||||||
14624327-T-A | 12512527-T-A | ** | ||||||
10885181-C-A | ** | |||||||
21827896-C-A | 19666010-C-A | FTB61102 | ** | |||||
24124499-C-A | 21978352-C-A | P3_b1 | ** | |||||
19389745-G-T | 17277865-G-T | ** | ||||||
15157857-T-A | 13045944-T-A | ** | ||||||
19246064-C-A | 17134184-C-A | ** | ||||||
16777992-C-A | 14666112-C-A | ** | ||||||
10980109-G-C | ** | |||||||
15450072-TC-T | 13338192-TC-T | ** | ||||||
28778988-C-T | 26632841-C-T | ** | ||||||
56850689-G-T | ** | |||||||
10769669-T-C | ** | |||||||
8901029-G-A | 9032988-G-A | ** | ||||||
7303824-C-A | 7435783-C-A | ** | ||||||
18955957-G-A | 16844077-G-A | ** | ||||||
10892071-C-A | ** | |||||||
6925653-C-A | 7057612-C-A | ** | ||||||
17004647-T-A | 14892767-T-A | ** | ||||||
7167008-C-A | 7298967-C-A | ** | ||||||
4960061-C-A | 5092020-C-A | ** | ||||||
3546718-C-A | 3678677-C-A | ** | ||||||
10969447-C-T | ** | |||||||
12370717-C-A | ** | |||||||
21115956-C-A | 18954070-C-A | ** | ||||||
2986627-C-A | 3118586-C-A | ** | ||||||
7240717-C-A | 7372676-C-A | ** | ||||||
13198082-C-A | 11042406-C-A | ** | ||||||
16993718-C-A | 14881838-C-A | ** | ||||||
23848565-G-T | 21686679-G-T | ** | ||||||
11644347-C-A | ** | |||||||
7534525-C-T | 7666484-C-T | ** | ||||||
3078294-C-A | 3210253-C-A | ** | ||||||
17313708-A-G | 15201828-A-G | FT5674 | ** | |||||
14981730-C-A | 12869806-C-A | ** | ||||||
22199329-C-A | 20037443-C-A | ** | ||||||
18857643-C-A | 16745763-C-A | ** | ||||||
14848948-C-A | 12737014-C-A | ** | ||||||
2906899-C-A | 3038858-C-A | ** | ||||||
11029685-C-T | ** | |||||||
11029693-C-T | ** | |||||||
11029720-T-TTCGTGTCCAC | ** | |||||||
9030267-G-T | 9192658-G-T | ** | ||||||
16070785-C-A | 13958905-C-A | ** | ||||||
21526858-C-A | 19364972-C-A | ** | ||||||
4567144-G-T | 4699103-G-T | ** | ||||||
10980136-T-A | ** | |||||||
14184612-C-A | 12063906-C-A | ** | ||||||
26379244-C-A | 24233097-C-A | P1_Y1 | ** | |||||
7113753-G-A | 7245712-G-A | ** | ||||||
7113758-T-C | 7245717-T-C | ** | ||||||
4302490-C-A | 4434449-C-A | ** | ||||||
13856624-A-T | 11735918-A-T | ** | ||||||
14464402-C-T | 12343675-C-T | ** | ||||||
22218864-A-G | 20056978-A-G | DYZ19 | ** | |||||
3815205-G-T | 3947164-G-T | ** | ||||||
15044999-C-A | 12933089-C-A | ** | ||||||
16848540-C-A | 14736660-C-A | ** | ||||||
18154545-C-A | 16042665-C-A | ** | ||||||
10802121-C-A | ** | |||||||
4863449-G-T | 4995408-G-T | ** | ||||||
8710019-C-A | 8841978-C-A | ** | ||||||
3046486-C-A | 3178445-C-A | ** | ||||||
15438938-C-A | 13327058-C-A | ** | ||||||
5022405-C-A | 5154364-C-A | ** | ||||||
5458650-C-A | 5590609-C-A | ** | ||||||
15940302-G-A | 13828422-G-A | ** | ||||||
21985220-C-A | 19823334-C-A | ** | ||||||
13411902-A-G | 11256226-A-G | ** | ||||||
10976261-C-G | ** | |||||||
14097969-G-GTT | 11977263-G-GTT | ** | ||||||
17013103-C-A | 14901223-C-A | ** | ||||||
21153635-G-T | 18991749-G-T | ** | ||||||
15733848-T-A | 13621968-T-A | ** | ||||||
9777497-G-A | 9939888-G-A | ** | ||||||
13225813-A-G | 11070137-A-G | ** | ||||||
56844500-T-C | ** | |||||||
10673050-C-A | ** | |||||||
2852517-C-A | 2984476-C-A | ** | ||||||
15435208-G-A | 13323328-G-A | ** | ||||||
14803046-C-A | 12691117-C-A | ** | ||||||
6458345-C-A | 6590304-C-A | ** | ||||||
2773418-G-T | 2905377-G-T | ** | ||||||
16536161-C-A | 14424281-C-A | ** | ||||||
13928825-C-T | 11808119-C-T | ** | ||||||
17628308-T-C | 15516428-T-C | ** | ||||||
7241893-G-T | 7373852-G-T | ** | ||||||
13291379-C-T | 11135703-C-T | ** | ||||||
10015027-T-C | 10177418-T-C | ** | ||||||
3437047-G-T | 3569006-G-T | ** | ||||||
10921241-C-T | ** | |||||||
10921242-A-C | ** | |||||||
28465308-C-A | 26319161-C-A | ** | ||||||
4388445-C-A | 4520404-C-A | ** | ||||||
19884265-A-AG | 17772385-A-AG | P5_Prx | ** | |||||
10794145-G-T | ** | |||||||
2790300-T-G | 2922259-T-G | ** | ||||||
19042704-C-A | 16930824-C-A | ** | ||||||
13597292-C-A | 11441616-C-A | FT446249 | ** | |||||
10885215-T-A | ** | |||||||
13859157-T-A | 11738451-T-A | ** | ||||||
10847172-G-C | ** | |||||||
11655164-C-A | ** | |||||||
10894852-C-A | ** | |||||||
11030578-A-T | FGC78332 | ** | ||||||
21555255-G-T | 19393369-G-T | ** | ||||||
14757380-C-A | 12645449-C-A | ** | ||||||
14766714-C-A | 12654783-C-A | ** | ||||||
21138688-C-A | 18976802-C-A | ** | ||||||
10995518-C-A | ** | |||||||
13475655-C-A | 11319979-C-A | ** | ||||||
9540124-T-TGC | 9702515-T-TGC | IR3_Prx | ** | |||||
13997726-C-A | 11877020-C-A | ** | ||||||
27447501-A-AGT | 25301354-A-AGT | P1_Y2 | ** | |||||
2842973-C-A | 2974932-C-A | ** | ||||||
3252433-C-A | 3384392-C-A | ** | ||||||
28759632-C-A | 26613485-C-A | ** | ||||||
18165862-C-A | 16053982-C-A | ** | ||||||
18381966-C-A | 16270086-C-A | P6_Gap | ** | |||||
2683525-C-A | 2815484-C-A | ** | ||||||
2960224-C-T | 3092183-C-T | ** | ||||||
2970008-T-C | 3101967-T-C | ** | ||||||
2985908-C-A | 3117867-C-A | ** | ||||||
2986632-T-G | 3118591-T-G | ** | ||||||
3005667-G-T | 3137626-G-T | ** | ||||||
3078226-T-C | 3210185-T-C | ** | ||||||
3093077-T-G | 3225036-T-G | ** | ||||||
3111765-A-T | 3243724-A-T | ** | ||||||
3267726-A-G | 3399685-A-G | ** | ||||||
3475990-T-C | 3607949-T-C | ** | ||||||
3727267-G-T | 3859226-G-T | ** | ||||||
3775333-T-C | 3907292-T-C | ** | ||||||
4062371-C-A | 4194330-C-A | ** | ||||||
4110854-C-A | 4242813-C-A | ** | ||||||
4188208-C-A | 4320167-C-A | ** | ||||||
4301476-G-T | 4433435-G-T | ** | ||||||
4357471-T-C | 4489430-T-C | ** | ||||||
4373879-G-A | 4505838-G-A | ** | ||||||
4580600-A-T | 4712559-A-T | ** | ||||||
4616832-C-A | 4748791-C-A | ** | ||||||
4629297-G-T | 4761256-G-T | ** | ||||||
4683869-C-A | 4815828-C-A | ** | ||||||
4897987-A-G | 5029946-A-G | ** | ||||||
4897994-T-G | 5029953-T-G | ** | ||||||
4969249-C-A | 5101208-C-A | ** | ||||||
5211816-C-A | 5343775-C-A | ** | ||||||
5261150-C-A | 5393109-C-A | ** | ||||||
5310334-T-A | 5442293-T-A | ** | ||||||
5359954-C-A | 5491913-C-A | ** | ||||||
5409553-T-C | 5541512-T-C | ** | ||||||
5523586-T-C | 5655545-T-C | FT152739 | ** | |||||
5524612-T-A | 5656571-T-A | ** | ||||||
5551188-C-A | 5683147-C-A | ** | ||||||
6065629-C-A | 6197588-C-A | ** | ||||||
6144844-G-T | 6276803-G-T | IR3_Dst | ** | |||||
6153225-AT-A | 6285184-AT-A | IR3_Dst | ** | |||||
6354193-G-T | 6486152-G-T | ** | ||||||
6435972-T-A | 6567931-T-A | ** | ||||||
6523915-A-G | 6655874-A-G | ** | ||||||
6596061-T-C | 6728020-T-C | ** | ||||||
6626784-G-T | 6758743-G-T | ** | ||||||
6816621-C-A | 6948580-C-A | ** | ||||||
6915841-C-A | 7047800-C-A | ** | ||||||
7021477-C-A | 7153436-C-A | ** | ||||||
7043327-G-T | 7175286-G-T | ** | ||||||
7113760-G-C | 7245719-G-C | ** | ||||||
7143335-C-A | 7275294-C-A | ** | ||||||
7156682-A-T | 7288641-A-T | ** | ||||||
7176058-T-C | 7308017-T-C | ** | ||||||
7186712-A-T | 7318671-A-T | ** | ||||||
7201651-C-T | 7333610-C-T | ** | ||||||
7257964-C-T | 7389923-C-T | ** | ||||||
7310624-G-A | 7442583-G-A | ** | ||||||
7314570-CA-C | 7446529-CA-C | ** | ||||||
7378357-C-A | 7510316-C-A | ** | ||||||
7541104-G-A | 7673063-G-A | FT107368 | ** | |||||
7603151-C-A | 7735110-C-A | ** | ||||||
7608534-C-G | 7740493-C-G | ** | ||||||
7621625-A-T | 7753584-A-T | ** | ||||||
7724625-A-T | 7856584-A-T | ** | ||||||
7775084-C-A | 7907043-C-A | ** | ||||||
7897678-G-T | 8029637-G-T | ** | ||||||
8343982-A-G | 8475941-A-G | ** | ||||||
8673754-C-A | 8805713-C-A | ** | ||||||
8737973-C-A | 8869932-C-A | ** | ||||||
8856812-C-A | 8988771-C-A | ** | ||||||
8901000-C-T | 9032959-C-T | ** | ||||||
8901032-A-T | 9032991-A-T | ** | ||||||
9118123-A-G | ** | |||||||
9025523-G-A | 9187914-G-A | ** | ||||||
9329786-A-T | 9492177-A-T | ** | ||||||
9430111-T-A | 9592502-T-A | ** | ||||||
9471733-C-A | 9634124-C-A | ** | ||||||
9482417-C-G | 9644808-C-G | ** | ||||||
9577161-C-T | 9739552-C-T | IR3_Prx | ** | |||||
9700088-C-A | 9862479-C-A | IR3_Prx | ** | |||||
9735692-C-T | 9898083-C-T | IR3_Prx | ** | |||||
9777503-GTC-G | 9939894-GTC-G | ** | ||||||
9830871-C-A | 9993262-C-A | ** | ||||||
9965399-G-A | 10127790-G-A | ** | ||||||
9980734-C-G | 10143125-C-G | ** | ||||||
10001092-C-A | 10163483-C-A | ** | ||||||
10001097-C-T | 10163488-C-T | ** | ||||||
10041598-G-T | 10203989-G-T | ** | ||||||
10662012-T-C | ** | |||||||
10662036-C-A | ** | |||||||
10744617-TC-T | ** | |||||||
10748004-GCCATTCCATTCCATTCCATTCCATTCCATT-G | ** | |||||||
10753099-A-T | ** | |||||||
10755089-C-A | ** | |||||||
10761699-A-T | ** | |||||||
10783511-C-A | ** | |||||||
10797741-C-CCACTCCACTA | ** | |||||||
10805142-T-C | ** | |||||||
10805458-C-A | ** | |||||||
10819118-C-T | ** | |||||||
10827202-T-C | ** | |||||||
10829238-A-T | ** | |||||||
10835468-C-A | ** | |||||||
10841261-C-A | ** | |||||||
10843287-A-G | ** | |||||||
10847153-T-C | ** | |||||||
10847187-G-C | ** | |||||||
10850485-C-G | ** | |||||||
10865567-C-A | ** | |||||||
10866046-C-CATTTT | ** | |||||||
10876651-C-T | FT435103 | ** | ||||||
10880288-A-C | ** | |||||||
10885322-A-G | ** | |||||||
10889135-C-A | ** | |||||||
10901699-T-C | ** | |||||||
10915784-G-T | ** | |||||||
10945910-A-C | ** | |||||||
10968329-C-A | ** | |||||||
10976585-T-C | ** | |||||||
10980114-G-C | ** | |||||||
10987601-C-A | ** | |||||||
11007786-T-C | ** | |||||||
11008824-A-C | ** | |||||||
11024401-C-T | ** | |||||||
13213887-A-G | 11058211-A-G | ** | ||||||
13326848-C-A | 11171172-C-A | ** | ||||||
13419495-C-G | 11263819-C-G | ** | ||||||
13435134-C-A | 11279458-C-A | ** | ||||||
13467900-T-G | 11312224-T-G | ** | ||||||
13467907-T-C | 11312231-T-C | ** | ||||||
13505037-C-G | 11349361-C-G | ** | ||||||
13554585-T-A | 11398909-T-A | ** | ||||||
13626709-C-A | 11471033-C-A | ** | ||||||
13643381-T-C | 11487705-T-C | ** | ||||||
13643407-A-C | 11487731-A-C | ** | ||||||
11644368-GA-G | ** | |||||||
11650407-G-T | ** | |||||||
11658296-T-G | ** | |||||||
11663593-G-T | ** | |||||||
11664883-A-T | ** | |||||||
11668803-G-T | ** | |||||||
13859123-T-G | 11738417-T-G | ** | ||||||
13939983-A-G | 11819277-A-G | ** | ||||||
13973019-A-C | 11852313-A-C | ** | ||||||
14074053-C-A | 11953347-C-A | ** | ||||||
14088916-A-G | 11968210-A-G | ** | ||||||
14196226-A-C | 12075520-A-C | ** | ||||||
14268941-T-C | 12148235-T-C | ** | ||||||
14348025-T-C | 12227320-T-C | ** | ||||||
14351253-T-C | 12230548-T-C | ** | ||||||
14354499-A-G | 12233794-A-G | FT179961 | ** | |||||
14377098-C-A | 12256394-C-A | ** | ||||||
14398278-C-G | 12277574-C-G | ** | ||||||
14448303-C-A | 12327576-C-A | ** | ||||||
14490790-C-A | 12370059-C-A | ** | ||||||
14540643-C-A | 12428844-C-A | ** | ||||||
14693899-G-A | 12581965-G-A | ** | ||||||
14803062-G-C | 12691133-G-C | ** | ||||||
14825826-T-C | 12713893-T-C | ** | ||||||
14849000-C-A | 12737066-C-A | ** | ||||||
15044959-C-A | 12933049-C-A | ** | ||||||
15189644-C-A | 13077730-C-A | ** | ||||||
15252845-A-G | 13140931-A-G | ** | ||||||
15259115-GT-G | 13147199-GT-G | ** | ||||||
15374548-A-C | 13262668-A-C | ** | ||||||
15379253-A-T | 13267373-A-T | ** | ||||||
15402285-C-G | 13290405-C-G | ** | ||||||
15416826-G-T | 13304946-G-T | ** | ||||||
15576641-C-A | 13464761-C-A | ** | ||||||
15622559-T-G | 13510679-T-G | ** | ||||||
15669962-CACA-C | 13558082-CACA-C | ** | ||||||
15677424-T-C | 13565544-T-C | ** | ||||||
15684364-T-A | 13572484-T-A | ** | ||||||
15735353-C-A | 13623473-C-A | ** | ||||||
15769122-T-C | 13657242-T-C | ** | ||||||
15795214-T-A | 13683334-T-A | ** | ||||||
16020760-T-C | 13908880-T-C | ** | ||||||
16021335-C-A | 13909455-C-A | ** | ||||||
16028303-A-G | 13916423-A-G | ** | ||||||
16052096-T-C | 13940216-T-C | ** | ||||||
16180761-C-T | 14068881-C-T | ** | ||||||
16221600-A-C | 14109720-A-C | ** | ||||||
16344448-T-C | 14232568-T-C | ** | ||||||
16475236-A-G | 14363356-A-G | ** | ||||||
16480001-G-A | 14368121-G-A | FT305054 | ** | |||||
16559781-G-T | 14447901-G-T | ** | ||||||
16616851-C-A | 14504971-C-A | ** | ||||||
16663462-C-A | 14551582-C-A | ** | ||||||
16800695-A-T | 14688815-A-T | ** | ||||||
16800695-AG-A | 14688815-AG-A | ** | ||||||
16971324-C-A | 14859444-C-A | ** | ||||||
17039149-C-A | 14927269-C-A | ** | ||||||
17058800-C-T | 14946920-C-T | ** | ||||||
17103427-A-C | 14991547-A-C | ** | ||||||
17155975-C-A | 15044095-C-A | ** | ||||||
17513946-G-T | 15402066-G-T | FTA11910 | ** | |||||
17597965-G-A | 15486085-G-A | FT149536 | ** | |||||
17722621-T-A | 15610741-T-A | ** | ||||||
17842324-C-A | 15730444-C-A | ** | ||||||
17854309-C-A | 15742429-C-A | ** | ||||||
17883796-G-A | 15771916-G-A | ** | ||||||
17916487-C-T | 15804607-C-T | ** | ||||||
17923740-G-A | 15811860-G-A | ** | ||||||
18050498-G-A | 15938618-G-A | FT82026 | FT82072 | ** | ||||
18127500-C-G | 16015620-C-G | ** | ||||||
18144129-C-T | 16032249-C-T | ** | ||||||
18190210-G-T | 16078330-G-T | ** | ||||||
18539171-C-A | 16427291-C-A | ** | ||||||
18618217-T-C | 16506337-T-C | ** | ||||||
18695885-C-T | 16584005-C-T | ** | ||||||
18749913-G-A | 16638033-G-A | ** | ||||||
18789750-C-T | 16677870-C-T | ** | ||||||
18844394-C-A | 16732514-C-A | ** | ||||||
18847959-A-G | 16736079-A-G | ** | ||||||
18966247-G-T | 16854367-G-T | ** | ||||||
18991026-T-C | 16879146-T-C | ** | ||||||
19044539-A-G | 16932659-A-G | ** | ||||||
19072153-C-A | 16960273-C-A | ** | ||||||
19155874-C-A | 17043994-C-A | ** | ||||||
19449222-T-A | 17337342-T-A | ** | ||||||
19465704-C-A | 17353824-C-A | ** | ||||||
19559024-G-C | 17447144-G-C | ** | ||||||
20340112-T-A | 18178226-T-A | P5_Dst | ** | |||||
20533325-G-T | 18371439-G-T | P5_Dst | ** | |||||
20809835-C-A | 18647949-C-A | P4_Gap | ** | |||||
21087103-G-A | 18925217-G-A | FT6050 | ** | |||||
21375770-A-C | 19213884-A-C | ** | ||||||
21426938-T-G | 19265052-T-G | ** | ||||||
21513931-G-T | 19352045-G-T | ** | ||||||
21582726-A-G | 19420840-A-G | ** | ||||||
21662148-T-A | 19500262-T-A | 14×A | ** | |||||
21668737-C-A | 19506851-C-A | ** | ||||||
21708815-G-T | 19546929-G-T | ** | ||||||
21770521-C-A | 19608635-C-A | ** | ||||||
21920627-G-T | 19758741-G-T | ** | ||||||
21939802-T-A | 19777916-T-A | ** | ||||||
21985187-A-G | 19823301-A-G | ** | ||||||
22093085-TA-T | 19931199-TA-T | ** | ||||||
22138060-C-T | 19976174-C-T | ** | ||||||
22138062-G-T | 19976176-G-T | ** | ||||||
22165008-C-A | 20003122-C-A | ** | ||||||
22175822-C-A | 20013936-C-A | ** | ||||||
22191759-A-G | 20029873-A-G | ** | ||||||
22199366-C-T | 20037480-C-T | ** | ||||||
22205131-T-G | 20043245-T-G | ** | ||||||
22337689-T-A | 20175803-T-A | DYZ19 | ** | |||||
22714972-T-C | 20553086-T-C | ** | ||||||
22810709-A-G | 20648823-A-G | ** | ||||||
22857680-C-A | 20695794-C-A | ** | ||||||
22991118-C-A | 20829232-C-A | ** | ||||||
23007415-C-T | 20845529-C-T | ** | ||||||
23333860-C-T | 21171974-C-T | ** | ||||||
23512288-C-G | 21350402-C-G | ** | ||||||
23512313-A-G | 21350427-A-G | ** | ||||||
23512388-G-T | 21350502-G-T | ** | ||||||
21752625-A-T | ** | |||||||
25995542-A-ATACG | 23849395-A-ATACG | P1_Y1 | ** | |||||
26047320-C-T | 23901173-C-T | P1_Y1 | ** | |||||
26440619-GT-G | 24294472-GT-G | P1_Y1 | ** | |||||
27546747-T-TA | 25400600-T-TA | P1_Y2 | ** | |||||
27756304-A-T | 25610157-A-T | P1_Y2 | ** | |||||
28484819-T-C | 26338672-T-C | ** | ||||||
28565084-G-T | 26418937-G-T | ** | ||||||
28609514-TCTACGA-T | 26463367-TCTACGA-T | ** | ||||||
28609572-G-C | 26463425-G-C | ** | ||||||
28639686-A-C | 26493539-A-C | ** | ||||||
28644347-T-C | 26498200-T-C | ** | ||||||
28651754-C-A | 26505607-C-A | ** | ||||||
28689426-C-A | 26543279-C-A | ** | ||||||
28697116-C-A | 26550969-C-A | ** | ||||||
56839145-T-C | ** | |||||||
56843821-G-T | ** | |||||||
56845399-G-T | ** | |||||||
56850203-A-C | ** | |||||||
56850670-G-A | ** | |||||||
56857593-T-C | ** | |||||||
56885481-C-A | ** | |||||||
21052567-T-TG | 18890681-T-TG | 8×G | *** | |||||
16422352-C-A | 14310472-C-A | *** | ||||||
2855294-C-T | 2987253-C-T | *** | ||||||
2855284-G-T | 2987243-G-T | *** | ||||||
13280490-C-A | 11124814-C-A | *** | ||||||
15941461-C-A | 13829581-C-A | *** | ||||||
19271375-C-A | 17159495-C-A | *** | ||||||
16422344-C-A | 14310464-C-A | *** | ||||||
10922223-C-A | *** | |||||||
13460612-A-G | 11304936-A-G | *** | ||||||
10693749-CTTTCC-A,CATTCC | *** | |||||||
10671185-CTCCACTTCACTCCAG-C,CTCCAC | *** | |||||||
15956866-C-T | 13844986-C-T | 15×T | *** | |||||
5782143-C-A | 5914102-C-A | *** | ||||||
5358562-C-A | 5490521-C-A | *** | ||||||
10999859-G-GGGTTA | *** | |||||||
11030160-A-AA,AC | *** | |||||||
17032304-C-A | 14920424-C-A | *** | ||||||
11643717-T-G | *** | |||||||
8843536-A-T | 8975495-A-T | 23×T | *** | |||||
9063859-CTTT-C,CTTTT | 9226250-CTTT-C,CTTTT | 16×T | *** | |||||
23420976-C-A | 21259090-C-A | Y137479 | *** | |||||
8379665-C-A | 8511624-C-A | *** | ||||||
23196165-C-T | 21034279-C-T | *** | ||||||
13482962-G-T | 11327286-G-T | *** | ||||||
15059741-C-A | 12947833-C-A | *** | ||||||
15479962-TTG-G,T | 13368082-TTG-G,T | *** | ||||||
7502459-G-T | 7634418-G-T | IR1_L | *** | |||||
19204219-C-A | 17092339-C-A | *** | ||||||
14086065-C-A | 11965359-C-A | *** | ||||||
10671554-C-A | *** | |||||||
10773275-T-C | *** | |||||||
14356478-A-G | 12235773-A-G | *** | ||||||
14391836-C-A | 12271132-C-A | *** | ||||||
22138166-CT-C | 19976280-CT-C | 8×T | *** | |||||
4302147-C-T | 4434106-C-T | *** | ||||||
3626711-A-C | 3758670-A-C | *** | ||||||
10693780-A-T | *** | |||||||
10922266-T-G | *** | |||||||
10955429-T-C | *** | |||||||
10955459-T-C | *** | |||||||
10999040-T-A | *** | |||||||
13206162-T-A | 11050486-T-A | *** | ||||||
11652821-A-G | *** | |||||||
13855425-T-G | 11734719-T-G | *** | ||||||
13928683-T-A | 11807977-T-A | *** | ||||||
13932682-A-G | 11811976-A-G | *** | ||||||
14005909-G-A | 11885203-G-A | *** | ||||||
14743211-A-G | 12631279-A-G | *** | ||||||
15849004-T-A | 13737124-T-A | *** | ||||||
16493288-C-T | 14381408-C-T | *** | ||||||
17028910-T-C | 14917030-T-C | *** | ||||||
17527367-T-A | 15415487-T-A | *** | ||||||
17755384-TAAA-T,TAA | 15643504-TAAA-T,TAA | 17×A | *** | |||||
17869754-C-A | 15757874-C-A | *** | ||||||
17913252-C-A | 15801372-C-A | *** | ||||||
17960977-T-C | 15849097-T-C | *** | ||||||
18222700-C-T | 16110820-C-T | *** | ||||||
18929082-A-G | 16817202-A-G | *** | ||||||
21128283-C-A | 18966397-C-A | *** | ||||||
21153535-A-G | 18991649-A-G | *** |
In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.
For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.
The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.
The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.